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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
PKHGKRYRALLEKVDPNKIYTIDEAAHLVKELATAKFDETVEVHAKLGIDPRRSDQNVRGTVSLPHGGRIEFRNDKTGAI
HAPVGKASFPPEKLADNIRAFIRALEAHKPEGAKGTFLRSVYVTTTMGPSVRINPHS

The query sequence (length=137) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2vpl:A 137 137 1.0000 1.0000 1.0000 8.74e-99 5e7k:71, 5e81:71, 5el4:71, 5el5:71, 5el6:71, 5el7:71, 6gsl:71, 6gsl:79, 5hau:1C, 5hau:2C, 5ib7:71, 5ib8:71, 5ibb:71, 5j8b:C, 6qnq:71, 6qnr:71, 6qnr:79, 4v4i:A, 4v4j:A, 2vpl:C, 4wpo:AC, 4wpo:CC, 4wqf:AC, 4wqf:CC, 4wqu:AC, 4wqu:CC, 4wqy:AC, 4wqy:CC, 4wu1:71, 4wu1:79, 4wzd:71, 4wzd:79
2 6c5l:BC 120 137 0.8613 0.9833 0.8613 8.64e-80 6c5l:DC, 4v5j:BC, 4v5j:DC, 4v7j:AC, 4v7j:BC, 4v7k:AC, 4v7k:BC, 4v8n:BC, 4v8n:DC, 4v8x:BC, 4v8x:DC
3 4wzo:71 93 131 0.6788 1.0000 0.7099 2.30e-52
4 4qvi:A 229 70 0.5036 0.3013 0.9857 1.51e-44 7a5f:n, 7a5g:n, 7a5j:n, 5a9z:AC, 5aa0:AC, 2hw8:A, 5imq:Z, 5imr:Z, 7lh5:BC, 7lh5:DC, 6n1d:AL01, 6n1d:BL01, 5npm:A, 2om7:K, 5ot7:f, 6q95:A, 4qg3:A, 4reo:A, 4u1u:B5, 4u1v:B5, 4u20:B5, 4u24:B5, 4u25:B5, 4u26:B5, 4u27:B5, 3u4m:A, 3u56:A, 3umy:A, 5uq7:C, 5uq8:C, 4v4p:AC, 4v4x:BC, 4v4y:BC, 4v4z:BC, 4v51:BC, 4v51:DC, 4v5a:BC, 4v5a:DC, 4v5c:BC, 4v5c:DC, 4v5d:BC, 4v5d:DC, 4v5e:BC, 4v5e:DC, 4v5f:BC, 4v5f:DC, 4v5g:BC, 4v5g:DC, 4v5k:BC, 4v5k:DC, 4v5l:BC, 4v5m:BC, 4v5n:BC, 4v5p:BC, 4v5p:DC, 4v5q:BC, 4v5q:DC, 4v5r:BC, 4v5r:DC, 4v5s:BC, 4v5s:DC, 4v68:BC, 4v6a:BC, 4v6a:DC, 4v7l:BC, 4v7l:DC, 4v7m:BC, 4v7m:DC, 4v8j:BC, 4v8j:DC, 4v8o:BC, 4v8q:AC, 4v8u:BC, 4v8u:DC, 4v8y:By, 4v8y:CL, 4v90:BC, 4v97:BC, 4v97:DC, 4v9h:BC, 4v9j:BC, 4v9j:DC, 4v9k:BC, 4v9k:DC, 4v9l:BC, 4v9l:DC, 4v9m:BC, 4v9m:DC, 4w29:BC, 4w29:DC, 4wf1:B5, 4woi:B5, 1zho:A, 1zho:C, 1zho:E, 1zho:G, 5zlu:Y
5 4qvi:A 229 67 0.4891 0.2926 1.0000 3.15e-42 7a5f:n, 7a5g:n, 7a5j:n, 5a9z:AC, 5aa0:AC, 2hw8:A, 5imq:Z, 5imr:Z, 7lh5:BC, 7lh5:DC, 6n1d:AL01, 6n1d:BL01, 5npm:A, 2om7:K, 5ot7:f, 6q95:A, 4qg3:A, 4reo:A, 4u1u:B5, 4u1v:B5, 4u20:B5, 4u24:B5, 4u25:B5, 4u26:B5, 4u27:B5, 3u4m:A, 3u56:A, 3umy:A, 5uq7:C, 5uq8:C, 4v4p:AC, 4v4x:BC, 4v4y:BC, 4v4z:BC, 4v51:BC, 4v51:DC, 4v5a:BC, 4v5a:DC, 4v5c:BC, 4v5c:DC, 4v5d:BC, 4v5d:DC, 4v5e:BC, 4v5e:DC, 4v5f:BC, 4v5f:DC, 4v5g:BC, 4v5g:DC, 4v5k:BC, 4v5k:DC, 4v5l:BC, 4v5m:BC, 4v5n:BC, 4v5p:BC, 4v5p:DC, 4v5q:BC, 4v5q:DC, 4v5r:BC, 4v5r:DC, 4v5s:BC, 4v5s:DC, 4v68:BC, 4v6a:BC, 4v6a:DC, 4v7l:BC, 4v7l:DC, 4v7m:BC, 4v7m:DC, 4v8j:BC, 4v8j:DC, 4v8o:BC, 4v8q:AC, 4v8u:BC, 4v8u:DC, 4v8y:By, 4v8y:CL, 4v90:BC, 4v97:BC, 4v97:DC, 4v9h:BC, 4v9j:BC, 4v9j:DC, 4v9k:BC, 4v9k:DC, 4v9l:BC, 4v9l:DC, 4v9m:BC, 4v9m:DC, 4w29:BC, 4w29:DC, 4wf1:B5, 4woi:B5, 1zho:A, 1zho:C, 1zho:E, 1zho:G, 5zlu:Y
6 6bu8:03 134 134 0.5036 0.5149 0.5149 1.71e-44 7jsz:a, 7jt3:a, 7k50:a, 7k51:a, 7k52:a, 7k53:a, 7k54:a, 7k55:a, 7lv0:a, 7n2c:LA, 6ofx:a, 6og7:a, 6ogf:a, 6ogg:a, 6ogi:a, 8peg:a, 8pkl:a, 7qg8:C, 7qgh:C, 7qgn:C, 7qgr:C, 8r3v:a2, 8rcl:a2, 8rcm:a2, 7ss9:a, 7ssd:a, 7ssl:a, 7sso:a, 7ssw:a, 7st2:a, 7st7:a, 7tos:L1, 7ug7:LA, 5uyl:03, 5uym:03, 5uyn:03, 5uyp:03, 5uyq:03, 8vs9:L1, 8vsa:L1, 6wd0:a, 6wd1:a, 6wd2:a, 6wd3:a, 6wd4:a, 6wd5:a, 6wd6:a, 6wd7:a, 6wd8:a, 6wd9:a, 6wda:a, 6wdb:a, 6wdc:a, 6wdd:a, 6wde:a, 6wdf:a, 6wdg:a, 6wdh:a, 6wdi:a, 6wdj:a, 6wdk:a, 6wdl:a, 6wdm:a, 6wnt:a, 6wnv:a, 6wnw:a
7 7nhk:F 132 130 0.3942 0.4091 0.4154 1.36e-31
8 3j3v:5 120 136 0.4088 0.4667 0.4118 9.37e-31 3j3w:5
9 5dm6:0 224 63 0.3869 0.2366 0.8413 1.30e-30 5dm7:0
10 5dm6:0 224 75 0.3358 0.2054 0.6133 5.91e-25 5dm7:0
11 8v9j:K 102 96 0.3431 0.4608 0.4896 2.15e-25 8v9k:K
12 4v9i:BC 190 50 0.3066 0.2211 0.8400 2.54e-21 4v9i:DC, 4wt8:CA, 4wt8:DA
13 5ady:5 234 66 0.2993 0.1752 0.6212 4.24e-20 4csu:5, 6dnc:E, 6enj:7, 6enu:7, 3j46:5, 3j5s:F, 3j8g:5, 3j9z:LC, 3ja1:LC, 3jcd:5, 3jce:5, 8rcs:a2, 8rct:a2, 5u9f:03, 5u9g:03, 5uyk:03, 4v4v:B2, 4v4w:B2, 4v5h:B5, 4v69:B5, 4v6k:AC, 4v6l:BC, 4v6m:B5, 4v6n:AC, 4v6o:BC, 4v6p:BC, 4v6q:BC, 4v6r:BC, 4v6s:AC, 4v6v:BC, 4v6y:B5, 4v6z:B5, 4v70:B5, 4v71:B5, 4v72:B5, 4v73:B5, 4v74:B5, 4v75:B5, 4v76:B5, 4v77:B5, 4v78:B5, 4v79:B5, 4v7a:B5, 4v7c:BC, 4v7d:AC, 4v7i:A5
14 5ady:5 234 78 0.2263 0.1325 0.3974 1.85e-15 4csu:5, 6dnc:E, 6enj:7, 6enu:7, 3j46:5, 3j5s:F, 3j8g:5, 3j9z:LC, 3ja1:LC, 3jcd:5, 3jce:5, 8rcs:a2, 8rct:a2, 5u9f:03, 5u9g:03, 5uyk:03, 4v4v:B2, 4v4w:B2, 4v5h:B5, 4v69:B5, 4v6k:AC, 4v6l:BC, 4v6m:B5, 4v6n:AC, 4v6o:BC, 4v6p:BC, 4v6q:BC, 4v6r:BC, 4v6s:AC, 4v6v:BC, 4v6y:B5, 4v6z:B5, 4v70:B5, 4v71:B5, 4v72:B5, 4v73:B5, 4v74:B5, 4v75:B5, 4v76:B5, 4v77:B5, 4v78:B5, 4v79:B5, 4v7a:B5, 4v7c:BC, 4v7d:AC, 4v7i:A5
15 5e7k:79 57 119 0.4015 0.9649 0.4622 3.10e-19 5e81:79, 5el6:79, 5el7:79, 5ibb:79
16 4v61:BD 227 78 0.2555 0.1542 0.4487 6.88e-19
17 4v61:BD 227 63 0.1825 0.1101 0.3968 1.11e-09
18 7msc:8 230 63 0.2628 0.1565 0.5714 9.08e-17 7msh:8, 7msm:8, 7msz:8, 7mt2:8, 7mt3:8, 7mt7:8
19 7msc:8 230 70 0.2117 0.1261 0.4143 1.36e-11 7msh:8, 7msm:8, 7msz:8, 7mt2:8, 7mt3:8, 7mt7:8
20 6ha8:8 212 70 0.2190 0.1415 0.4286 7.77e-16
21 6ha8:8 212 51 0.2117 0.1368 0.5686 2.01e-13
22 7p7q:F 226 66 0.2336 0.1416 0.4848 1.19e-15 7p7r:F, 7p7s:F, 7p7t:F
23 7p7q:F 226 70 0.2117 0.1283 0.4143 4.00e-14 7p7r:F, 7p7s:F, 7p7t:F
24 8fmw:AC 221 79 0.2044 0.1267 0.3544 3.40e-15
25 8fmw:AC 221 62 0.1825 0.1131 0.4032 6.09e-09
26 4v4n:AA 216 65 0.1898 0.1204 0.4000 1.64e-07 4v6u:BA
27 6ywx:e 150 98 0.2190 0.2000 0.3061 1.89e-07 6ywy:e
28 4d5y:u 210 78 0.1898 0.1238 0.3333 6.83e-05 4d67:u, 4ujc:Bu, 4ujd:Au, 4uje:Cu, 4v5z:B5
29 8oir:Bj 164 137 0.2263 0.1890 0.2263 1.02e-04 8oit:Bj, 7qi4:z
30 8brm:Ln 211 83 0.1679 0.1090 0.2771 1.47e-04 8br8:Ln, 8bsi:Ln, 8bsj:Ln, 8btd:Ln, 8btr:Ln
31 6ywe:e 242 69 0.1533 0.0868 0.3043 1.84e-04 6yws:e
32 8oin:Bj 164 137 0.2190 0.1829 0.2190 0.002 8oiq:Bj
33 1mzp:A 217 54 0.1387 0.0876 0.3519 0.003 8hku:AL1P, 8hky:AL1P, 8hkz:AL1P, 8hl1:AL1P, 8hl2:AL1P, 8hl3:AL1P, 8hl4:AL1P, 8hl5:AL1P, 4v49:B5, 4v4a:B5, 4v4g:B7, 4v4g:D7, 4v4g:F7, 4v4g:H7, 4v4g:J7, 4v65:BZ, 4v66:BZ
34 1u63:A 214 51 0.1387 0.0888 0.3725 0.083 1i2a:A, 1u63:C
35 4v3p:LA 216 64 0.1168 0.0741 0.2500 0.22 4v7e:Cz
36 4v3p:LA 216 39 0.1241 0.0787 0.4359 2.4 4v7e:Cz
37 5jpq:k 182 41 0.1387 0.1044 0.4634 0.92 5oql:Q
38 8i9p:CB 269 41 0.1387 0.0706 0.4634 1.0 8i9r:CB, 8i9t:CB, 8i9v:CB, 8i9w:CB, 8i9x:CB, 8i9y:CB, 8i9z:CB, 8ia0:CB, 8pv1:CB, 8pv3:CB, 8pv4:CB, 8pv7:CB, 8pvk:CB, 6rxt:UZ, 6rxu:UZ, 6rxv:UZ, 6rxy:UZ, 6rxz:UZ
39 2vbe:A 510 84 0.1825 0.0490 0.2976 1.7 4urr:B, 4urr:A, 4urr:C, 4urr:D, 4urr:E, 4urr:F, 2vbm:A
40 7kx9:A 734 46 0.1241 0.0232 0.3696 2.0 7kx7:A, 7yfq:A, 7yg6:A
41 6l2n:A 217 55 0.1387 0.0876 0.3455 3.7 5iff:A, 5iff:B, 6l2n:B, 6l2o:A, 6l2o:B, 6m3l:A, 3waz:A, 3waz:B
42 4v8m:BJ 214 44 0.1022 0.0654 0.3182 4.3
43 3haz:A 983 48 0.1022 0.0142 0.2917 7.7 6bsn:A, 6bsn:B, 3haz:B, 4q71:A, 4q71:B, 4q72:A, 4q72:B, 4q73:A, 4q73:B
44 2oo4:A 226 17 0.0657 0.0398 0.5294 8.5 2oo4:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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