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BioLiP
>protein
PKFYCDYCDTYLTHDSPSVRKTHCSGRKHKENVKDYYQKWMEEQAQSLID

The query sequence (length=50) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 2vrd:A 61 50 1.0000 0.8197 1.0000 4.89e-34 4pjo:L, 4pjo:l, 4pjo:M, 4pjo:m, 6qx9:1C, 7vpx:N
2 8w2o:B 178 49 0.7600 0.2135 0.7755 6.38e-22
3 6n7p:B 195 49 0.4200 0.1077 0.4286 1.33e-08 6g90:C, 6n7r:B, 6n7x:B, 7oqc:C, 7oqe:C, 5zwn:R
4 8q7n:X 81 33 0.3200 0.1975 0.4848 8.30e-05 8h6k:4I, 8h6l:4I, 8qo9:X, 8qpe:X, 8qzs:X
5 3zj2:A 71 33 0.3400 0.2394 0.5152 0.077
6 8y6o:V 101 47 0.3000 0.1485 0.3191 0.17
7 8hfr:ox 143 32 0.2400 0.0839 0.3750 0.82 6ft6:I, 3jct:I, 6m62:I, 6n8j:I, 6n8k:I, 6n8l:I, 7ug6:I, 7uoo:I, 7uqb:I, 7uqz:I, 7v08:I, 6ylg:I, 6ylh:I, 6yly:I, 7z34:I
8 3cc2:R 150 47 0.2600 0.0867 0.2766 1.4 3cc4:R, 3cc7:R, 3cce:R, 3ccj:R, 3ccl:R, 3ccm:R, 3ccq:R, 3ccr:R, 3ccs:R, 3ccu:R, 3ccv:R, 3cd6:R, 3cma:R, 3cme:R, 3cpw:Q, 3cxc:Q, 1ffk:O, 3g4s:R, 3g6e:R, 3g71:R, 3i55:R, 3i56:R, 1jj2:Q, 1k73:S, 1k8a:S, 1k9m:S, 1kc8:S, 1kd1:S, 1kqs:Q, 1m1k:S, 1m90:S, 1n8r:S, 1nji:S, 2otj:R, 2otl:R, 3ow2:Q, 1q7y:S, 1q81:S, 1q82:S, 1q86:S, 2qa4:R, 2qex:R, 1qvf:Q, 1qvg:Q, 1s72:R, 4v9f:R, 1vq4:R, 1vq5:R, 1vq6:R, 1vq7:R, 1vq8:R, 1vq9:R, 1vqk:R, 1vql:R, 1vqm:R, 1vqn:R, 1vqo:R, 1vqp:R, 1w2b:Q, 1yhq:R, 1yi2:R, 1yij:R, 1yit:R, 1yj9:R, 1yjn:R, 1yjw:R
9 4rv4:B 211 31 0.2400 0.0569 0.3871 1.4 4rv4:A, 4rv4:C
10 7qwk:F 254 22 0.1800 0.0354 0.4091 2.2 6n3n:A, 6n3o:A, 7qwk:A, 7qwk:C, 7qwk:E
11 2l7x:A 77 34 0.2400 0.1558 0.3529 2.7
12 7t3u:A 2020 53 0.3000 0.0074 0.2830 3.4 7t3u:D
13 7t3u:C 1575 53 0.3000 0.0095 0.2830 3.5
14 7t3q:A 2103 53 0.3000 0.0071 0.2830 3.6 7t3q:B, 7t3q:C, 7t3q:D, 7t3u:B
15 7t3p:A 2066 53 0.3000 0.0073 0.2830 3.7 7t3p:B, 7t3p:C, 7t3p:D
16 8qbn:Y 119 27 0.2600 0.1092 0.4815 3.7
17 6n3l:A 231 16 0.1600 0.0346 0.5000 5.1 6n3l:B
18 7e0d:A 604 13 0.1400 0.0116 0.5385 6.2 7e0c:A, 2e1m:A, 2e1m:B, 2e1m:C, 8jpw:A
19 7qq6:B 275 16 0.1600 0.0291 0.5000 6.5 7qq6:A, 7qq6:C, 7qq6:D, 7qwk:B, 7qwk:H, 7qwk:D, 7qwk:G
20 8uxu:A 317 28 0.2200 0.0347 0.3929 6.7 8uxu:B, 8uxu:C, 8uxu:D, 8uxu:E, 8uxu:F, 8uxu:G, 8uxu:H, 8uxu:I, 8uxu:J, 8uxu:K, 8uxu:L, 8uxu:M, 8uxu:N
21 4tpr:H 221 15 0.1200 0.0271 0.4000 7.5 2gsi:D, 2gsi:B, 2gsi:F, 4tqe:H
22 8kfx:R 288 39 0.2400 0.0417 0.3077 8.0 8kfy:R
23 1z41:A 337 14 0.1600 0.0237 0.5714 8.1 1z41:B, 1z42:A, 1z42:B, 1z44:A, 1z44:B, 1z48:A, 1z48:B
24 6kme:A 284 31 0.2600 0.0458 0.4194 8.5 6kmd:A
25 7z15:I 253 19 0.1400 0.0277 0.3684 9.9 7z15:J, 7z16:I, 7z16:J, 7z18:I, 7z18:J

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218