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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
PIYWKATNPTLSPSHLQDLPGFTRSVYKRDHALITPESHVYSPLPDWTNTLGAYLITPATGSHFVMYLAKMKEMSSSGLP
PQDIERLIFVVEGAVTLTNSSSKKLTVDSYAYLPPNFHHSLDCVESATLVVFERRYEYLGSHTTELIVGSTDKQPLLETP
GEVFELRKLLPMSVAYDFNIHTMDFQPGEFLNVKEVHYNQHGLLLLEGQGIYRLGDNWYPVQAGDVIWMAPFVPQWYAAL
GKTRSRYLLYKDVNRNPL

The query sequence (length=258) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 4e2q:A 258 258 1.0000 1.0000 1.0000 0.0 4e2q:B, 4e2q:C, 4e2q:D, 4e2q:E, 4e2q:F, 4e2q:G, 4e2q:H, 4e2q:I, 4e2q:J, 4e2q:K, 4e2q:L, 4e2q:M, 4e2q:N, 4e2q:O, 4e2q:P, 4e2s:A, 4e2s:B, 4e2s:C, 4e2s:D, 4e2s:E, 4e2s:F, 4e2s:G, 4e2s:H, 4e2s:I, 4e2s:J, 4e2s:K, 4e2s:L, 4e2s:M, 4e2s:N, 4e2s:O, 4e2s:P
2 3h94:A 297 45 0.0543 0.0471 0.3111 0.32 3h94:B, 3opo:A, 3opo:B, 3ow7:A, 3ow7:B
3 2gwh:B 288 37 0.0581 0.0521 0.4054 0.95 2gwh:A
4 8csu:7 414 171 0.1589 0.0990 0.2398 1.2 8csp:7, 8csq:7, 8csr:7, 8css:7, 8cst:7
5 6a6e:A 422 70 0.0736 0.0450 0.2714 6.2 6a6e:B, 6a6e:C, 6a6e:D, 6a6g:A, 6a6g:B
6 5oo4:A 121 43 0.0504 0.1074 0.3023 8.4 5oo5:A, 5oo8:A, 5oo9:A, 5ooa:A
7 6kzd:A 282 45 0.0581 0.0532 0.3333 9.2 6kzc:A, 3v5q:A, 3v5q:B, 4ymj:A, 4ymj:B
8 8ofi:C 415 37 0.0504 0.0313 0.3514 9.5

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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