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BioLiP
>protein
PIPAETGWDSAPGLLEGAMTLDLTPEQCDLGYWLRGVAQGTLAGRAETGHTDAEPTPEHMRADGPLRDAQVLELSCRSVA
EAQATRVLAHYVAQAPDIVELEFFTTQLVDEARHSMVFRRHLLAMGVPADRLHASIAEVSAEYRREVLEPILDFALTTVR
DEGDFVGGVAVFTIIIEGVLAPAAELSERKWNLLDPAAGAIARGAAIDEVRHLTVGSSVVRRHLLRRPERKAALLDIVRR
GREIWDGIPDRKHVLRREELFQAGMREHADLLAGYEVWPGQPLLSTTPEQRYAMAEQWTDRMAAARLVHMGLPEAIDLLR
LT

The query sequence (length=322) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6d9f:B 322 322 1.0000 1.0000 1.0000 0.0 6d9f:A
2 7qbp:A 291 130 0.1118 0.1237 0.2769 9.38e-05
3 4ac8:A 311 129 0.1180 0.1222 0.2946 0.002 4ac8:B, 4ac8:C, 4ac8:D, 3ee4:A
4 7qbk:A 284 129 0.0994 0.1127 0.2481 0.002
5 5dcs:A 287 166 0.1273 0.1429 0.2470 0.005 5dco:A, 5dcr:A, 5ekb:A, 6f65:A, 6f6b:A, 6f6c:A, 6f6c:B, 6f6e:A, 6f6e:B, 6f6f:A, 6f6g:A, 6f6g:B, 6f6h:A, 6f6h:B, 6f6k:A, 6f6k:B, 6f6l:A, 6f6l:B, 6f6m:A, 6f6m:B, 4hr0:A, 4hr4:A, 6i90:A, 6i92:A, 6i93:A, 6i94:A, 6i95:A, 5omj:A, 5omk:A, 6qjv:A, 6qk0:A, 6qk0:B, 6qk1:A, 6qk2:A, 6qk2:B, 4xb9:A, 4xbv:A, 4xbv:B, 4xbw:A
6 1k4y:A 501 67 0.0652 0.0419 0.3134 0.80
7 7dwe:A 212 46 0.0559 0.0849 0.3913 1.3 7dwg:A
8 7drj:A 190 102 0.0963 0.1632 0.3039 1.3 7drj:B, 7drk:A, 7drk:B
9 3wy9:A 416 68 0.0590 0.0457 0.2794 1.8 3wy9:B, 3wya:A
10 7p1y:AAA 174 54 0.0466 0.0862 0.2778 4.5 7p1y:BBB, 7p1y:DDD, 7p1y:CCC
11 5g5a:A 219 59 0.0683 0.1005 0.3729 6.0 5g5a:B, 5g5a:C, 5g5a:D
12 8axh:H 227 68 0.0621 0.0881 0.2941 6.9 5a2i:H, 5a2j:H, 5a2k:H, 5a2l:H, 1a6v:L, 1a6v:M, 1a6v:N, 1a6w:L, 2bjm:L, 1dl7:L, 6frj:H, 5fxc:H, 6fzq:H, 6fzr:H, 5n7b:H, 1oar:L, 1oar:M, 1oar:N, 1oar:O, 1oau:M, 1oau:O, 1oau:L, 1oau:N, 1oay:L, 1oay:N, 5owp:H, 1p4b:L, 6tgg:H
13 1td2:A 287 104 0.0745 0.0836 0.2308 7.1 1td2:B
14 1fcv:A 324 152 0.1087 0.1080 0.2303 8.5

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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