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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
PIKVGDAIPAVEVFEGEPGNKVNLAELFKGKKGVLFGVPGAFTPGCSKTHLPGFVEQAEALKAKGVQVVACLSVNDAFVT
GEWGRAHKAEGKVRLLADPTGAFGKETDLLLDDSLVSIFGNRRLKRFSMVVQDGIVKALNVEPDGTGLTCSLAPNIISQL

The query sequence (length=160) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 4k7i:A 162 160 1.0000 0.9877 1.0000 1.36e-114 4k7i:B, 4k7n:A, 4k7n:B, 4k7n:C, 4k7o:A, 4k7o:C, 4k7o:B, 4mmm:A, 4mmm:E, 4mmm:C, 4mmm:G
2 6qkg:B 664 41 0.0875 0.0211 0.3415 0.82 6qkg:A, 6qkr:A, 6qkr:B, 6qkx:A
3 6rd4:X 542 26 0.0875 0.0258 0.5385 0.87 6rd4:Y, 6rd9:X, 6rd9:Y, 6rdb:Z, 6rdb:X, 6rdb:Y, 6rdc:Y, 6rdc:Z, 6rde:Y, 6rde:Z, 6rdg:X, 6rdg:Z, 6rdh:X, 6rdh:Y, 6rdi:X, 6rdi:Y, 6rdj:X, 6rdj:Y, 6rdk:X, 6rdk:Y, 6rdl:X, 6rdl:Y, 6rdm:X, 6rdm:Y, 6rdn:Z, 6rdn:X, 6rdn:Y, 6rdo:Z, 6rdo:X, 6rdo:Y, 6rdp:Z, 6rdp:X, 6rdp:Y, 6rdq:Z, 6rdq:Y, 6rdq:X, 6rdr:Z, 6rdr:Y, 6rdr:X, 6rds:Z, 6rds:Y, 6rds:X, 6rdt:X, 6rdt:Y, 6rdu:X, 6rdu:Y, 6rdv:X, 6rdv:Y, 6rdw:X, 6rdw:Y, 6rdx:X, 6rdx:Y, 6rdy:X, 6rdy:Y, 6rdz:Z, 6rdz:Y, 6re0:Z, 6re0:Y, 6re1:Z, 6re1:Y, 6re2:Y, 6re2:Z, 6re3:Y, 6re3:Z, 6re4:Y, 6re4:Z, 6re5:Y, 6re5:Z, 6re6:Y, 6re6:Z, 6re7:Y, 6re7:Z, 6re8:X, 6re8:Y, 6re8:Z, 6re9:X, 6re9:Y, 6re9:Z, 6rea:X, 6rea:Y, 6rea:Z, 6reb:X, 6reb:Z, 6rec:X, 6rec:Z, 6red:X, 6red:Z, 6ree:Y, 6ree:X, 6ree:Z, 6ref:Y, 6ref:X, 6ref:Z, 6rep:X, 6rep:Z, 6rer:Y, 6rer:X, 6rer:Z, 6res:X, 6res:Z, 6ret:X, 6ret:Z, 6reu:X, 6reu:Z
4 1sm1:P 100 33 0.1000 0.1600 0.4848 1.0 7a0r:O, 7a0s:O, 7a18:O, 3cf5:O, 3dll:O, 5dm6:O, 5dm7:O, 4io9:O, 4ioa:O, 4ioc:O, 5jvg:O, 5jvh:O, 3pio:O, 3pip:O, 4u67:O, 4v4g:BS, 4v4g:DS, 4v4g:FS, 4v4g:HS, 4v4g:JS, 4v4p:A2, 4v4r:BV, 4v4s:BV, 4v4t:BV, 4wfn:O, 1xbp:P, 2zjp:O, 2zjq:O, 2zjr:O
5 2bes:C 158 31 0.0688 0.0696 0.3548 1.2 2bes:A, 2bes:B, 2bes:D, 2bes:E, 2bet:A, 2bet:B, 2bet:C, 2bet:D, 2bet:E, 1usl:A, 1usl:B, 1usl:C, 1usl:D, 1usl:E, 2vvo:A, 2vvo:B, 2vvo:C, 2vvo:D, 2vvo:E, 2vvp:A, 2vvp:B, 2vvp:C, 2vvp:D, 2vvp:E, 2vvq:A, 2vvq:B, 2vvq:C, 2vvq:D, 2vvq:E
6 5wf7:B 765 91 0.1500 0.0314 0.2637 1.4 5kji:B
7 5t4o:F 466 26 0.0750 0.0258 0.4615 2.3 8dbp:D, 8dbp:E, 8dbp:F, 8dbq:D, 8dbq:E, 8dbq:F, 8dbr:D, 8dbr:E, 8dbr:F, 8dbs:D, 8dbs:E, 8dbs:F, 8dbt:D, 8dbt:E, 8dbt:F, 8dbu:D, 8dbu:E, 8dbu:F, 8dbv:E, 8dbv:D, 8dbv:F, 8dbw:E, 8dbw:D, 8dbw:F, 3oaa:D, 3oaa:M, 3oaa:L, 3oaa:T, 3oaa:b, 6oqr:E, 6oqr:F, 6oqr:D, 6oqs:E, 6oqs:F, 6oqs:D, 6oqt:E, 6oqt:F, 6oqt:D, 6oqu:E, 6oqu:F, 6oqu:D, 6oqv:F, 6oqv:E, 6oqv:D, 6oqw:E, 6oqw:F, 6oqw:D, 6pqv:E, 6pqv:F, 6pqv:D, 5t4p:E, 5t4q:D, 6wnq:E, 6wnq:F, 6wnq:D, 6wnr:E, 6wnr:F, 6wnr:D
8 6agz:A 386 35 0.0813 0.0337 0.3714 2.7 6agz:B
9 1u3h:A 110 67 0.1125 0.1636 0.2687 2.9 1u3h:E
10 7eg5:A 125 68 0.1125 0.1440 0.2647 3.2 7eg5:B
11 7p2y:D 463 26 0.0875 0.0302 0.5385 3.2 7p3n:E, 7p3w:F, 7yry:D
12 5ivx:E 194 67 0.1125 0.0928 0.2687 3.3 3c6l:A, 3c6l:E
13 6vmb:E 481 26 0.0813 0.0270 0.5000 4.7 6fkf:D, 6fkf:F, 6fkh:F, 6fkh:B, 6fki:B, 6fki:D, 1kmh:B, 6vmb:D, 6vmb:F, 6vmd:E, 6vmd:D, 6vmd:F, 6vof:E, 6vof:F, 6vog:E, 6vog:F, 6voh:D, 6voh:F, 6voi:D, 6voi:E, 6voi:F, 6voj:D, 6voj:E, 6voj:F, 6vok:D, 6vok:E, 6vok:F, 6vol:D, 6vol:E, 6vol:F, 6vom:D, 6vom:E, 6vom:F, 6von:D, 6von:E, 6von:F, 6voo:E, 6voo:D, 6voo:F
14 5x8p:v 190 67 0.1313 0.1105 0.3134 4.8 5mmj:v, 5mmm:v, 5x8r:v
15 5h92:B 572 29 0.0813 0.0227 0.4483 5.4 5h8v:A, 5h8v:B, 5h8y:A, 5h8y:B, 5h8y:C, 5h8y:D, 5h92:A
16 7r81:R1 168 70 0.1437 0.1369 0.3286 6.1
17 5j6d:B 248 62 0.1187 0.0766 0.3065 6.4
18 7qw6:A 556 90 0.1313 0.0378 0.2333 7.2 7qw5:A, 7qw7:A
19 5tpg:A 271 62 0.1187 0.0701 0.3065 8.6
20 3q2w:A 541 53 0.1187 0.0351 0.3585 9.4 1ncj:A, 4num:A, 4num:B, 4num:C, 4num:D, 4nup:A, 4nup:B, 4nup:C, 4nuq:A, 2qvi:A
21 5ulb:A 333 87 0.1500 0.0721 0.2759 9.7

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218