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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
PIKTYHLSNLTQTELLSLKSRPRIDFSSVFDIVNPIVDDVHAHGDAAVKQYTSKFDKVDLENIVELVSDLPDPVLDPAIK
EAFDVAYSNIYAFHAAQKSPEKSVENMKGVQCKRVARSINSVGLYVPGGTAVLPSTALMLAVPAQIAGCKTIVLANPPTR
DGTTCKEVLYCAKKAGVTHLLKAGGAQAISAMAWGTETCPKVEKIFGPGNQYVTAAKMILQNSEAMVSIDMPAGPSEVLV
IADKHAIPSHVAADLLSQAEHGPDSQVVLVIAGDGVDQNAIQEEVSKQCQSLPRGEFAAKALSHSFIVHARDMLEAITFS
NMYAPEHLIINVKDAEKWESFIENAGSVFLGSWTPESVGDYASGTNHVLPTYGYARMYSGVSLDSFLKYITVQSLTEEGL
RKLGPYVETMAEVEGLEAHKRAVTLRLQDIEARQV

The query sequence (length=435) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5vld:F 435 435 1.0000 1.0000 1.0000 0.0 5vlb:A, 5vlb:B, 5vlb:C, 5vlb:D, 5vlb:E, 5vlb:F, 5vlc:A, 5vlc:B, 5vlc:C, 5vlc:D, 5vlc:E, 5vlc:F, 5vld:A, 5vld:B, 5vld:C, 5vld:D, 5vld:E
2 6an0:A 433 430 0.4851 0.4873 0.4907 2.13e-134
3 1kae:A 434 419 0.4805 0.4816 0.4988 1.27e-133 1kae:B, 1kah:A, 1kah:B, 1kar:A, 1kar:B
4 4g09:A 432 404 0.4000 0.4028 0.4307 1.29e-95 4g07:A
5 9cp7:A 436 416 0.3195 0.3188 0.3341 5.64e-61 9cp7:B, 9cp8:A, 9cp8:B, 9cp9:A, 9cp9:B, 8v35:A, 8v36:A, 8v37:A
6 8v37:B 405 406 0.2851 0.3062 0.3054 1.07e-45 8v35:B, 8v36:B
7 6p2l:A 685 67 0.0414 0.0263 0.2687 1.7
8 3e5p:B 371 20 0.0253 0.0296 0.5500 5.7 3e5p:A, 3e5p:C, 3e6e:A, 3e6e:C, 3e6e:B
9 6yqm:AAA 117 56 0.0414 0.1538 0.3214 7.8 1av5:B, 6b42:A, 5ed3:B, 5ed6:B, 5emt:A, 5emt:B, 4eqe:B, 4eqg:B, 4eqh:B, 5i2e:A, 5i2e:B, 5i2f:A, 5ipc:A, 5ipd:A, 5ipe:A, 6j53:B, 6j58:B, 6j5s:B, 6j5z:A, 6j5z:D, 6j64:B, 6j65:B, 6j65:E, 5kly:A, 5kly:B, 5klz:B, 5km0:A, 5km0:D, 5km1:A, 5km2:A, 5km3:A, 5km4:A, 5km6:A, 5kma:A, 5kmb:A, 5kmb:B, 5kmc:A, 1kpe:B, 1kpf:A, 6n3v:A, 6n3w:A, 6n3x:A, 6n3y:A, 6n3y:B, 3o1c:A, 3o1x:A, 5o8i:B, 8p8p:A, 8pa6:A, 8pa6:B, 8pa9:A, 8paf:A, 8paf:B, 8pai:A, 8pwk:A, 3qgz:A, 3rhn:A, 4rhn:A, 5rhn:A, 1rzy:A, 3tw2:A, 5wa8:A, 5wa9:A, 4zkl:B, 4zkl:D
10 6yca:A 390 41 0.0345 0.0385 0.3659 8.3 6yca:F, 6yca:B, 6yca:C, 6yca:D, 6yca:E
11 7abr:D 586 42 0.0276 0.0205 0.2857 8.8 7abr:A, 7abr:B, 7abr:C, 7abr:E
12 8bf6:A 278 53 0.0345 0.0540 0.2830 9.1 8bj9:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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