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BioLiP
>protein
PIFVNAKQYQAILRRRERRAKLEAQNKLIKVRKPYLHESRHLHALKRVRGSGGRFLNTKKHQ

The query sequence (length=62) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6r2v:A 62 62 1.0000 1.0000 1.0000 8.74e-40
2 4awl:A 62 59 0.5968 0.5968 0.6271 7.52e-21
3 4g92:A 61 59 0.5968 0.6066 0.6271 2.18e-18 7aw7:A, 7aw9:A, 6y35:A, 6y36:A, 6y37:A
4 8rgh:A 577 22 0.1935 0.0208 0.5455 0.93
5 3e3k:B 500 27 0.1613 0.0200 0.3704 1.1 7a0c:A, 7a0c:B, 4dcx:A, 4dcx:B, 4dcy:A, 4dcy:B, 3dp8:A, 3dp8:B, 3dp8:C, 3e3k:A, 3e3k:C, 4i8c:A, 4i8c:B, 4i8c:C, 4i9d:A, 4i9d:B, 5l8d:A, 5l8d:B, 3mvw:A, 3mvw:B, 3mvx:A, 3mvx:B, 3mvy:A, 3mvy:B, 3mvz:A, 3mvz:B, 3mw0:A, 3mw0:B, 5mwu:A, 5mwu:B, 3mz9:A, 3mz9:B, 3mzb:A, 3mzb:B, 2noo:A, 5on0:A, 5on0:B, 5on1:A, 5on1:B, 5on4:A, 5on4:B, 5on5:A, 5on5:B, 5on8:A, 5on8:B, 5on9:A, 5on9:B, 6r4q:A, 6r4q:B, 8spm:A, 1zlq:A, 1zlq:B
6 2os6:A 89 49 0.1935 0.1348 0.2449 1.3
7 3iv8:A 379 50 0.2419 0.0396 0.3000 2.8
8 6sc2:B 3930 22 0.1935 0.0031 0.5455 3.0 6rla:A, 6rla:B, 6sc2:A
9 8b82:A 108 34 0.1774 0.1019 0.3235 6.5 8b82:B, 8b87:A, 8b87:B, 8bia:A, 8cd3:B, 6ms1:A, 6ms1:B, 6mtu:B, 6mtu:A, 6mtv:A, 6mtv:B, 6mye:A, 7qrs:B, 7qrs:A, 7qs9:A, 7qs9:B, 7qto:A, 7qto:B, 7qtp:A, 5vwk:D, 5vwk:C, 5vwk:B, 5vwk:A, 6xa8:B, 6xa8:A
10 7dxg:A 698 25 0.1613 0.0143 0.4000 8.1 7dxf:A, 7dxf:D, 7dxf:B, 7dxf:C, 7dxg:D, 7dxg:C, 7dxg:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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