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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
PIELPPTYITPYPEISAGGNGTYRGQDLSSGQSFPRGMQNPVATVLLLQGDLYCSPNCLATFQDQARRDSFGIQSKVALK
TFAAADQREAEGRDLRTAYNEIATDIGRSQQINENIIKYPPGNHVLSGGLMTPFHALAHGMFGLGAPLTFPIQNVGLNVD
IRGIPDVMNVIQSARPVGTSSLDVNFAYDVGKDSNASWLTLGNITLRLVGTIDKNASGAWTFSGEIRAFNDVYDANPSNH
RGWLGENLTSLLSAVPFTSYSIEIPGSLPVTVSGNL

The query sequence (length=276) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 4fzm:A 276 276 1.0000 1.0000 1.0000 0.0 4fzl:A, 4fzl:B
2 4g75:A 292 159 0.2355 0.2226 0.4088 4.00e-33
3 4n58:A 266 155 0.2101 0.2180 0.3742 2.88e-29 4n58:B, 4n59:A, 4n59:B
4 8jc1:A 267 222 0.2681 0.2772 0.3333 3.46e-28 8jc1:B, 8jc1:C, 8jc1:D
5 3da3:A 270 149 0.2029 0.2074 0.3758 1.80e-25 3da3:B, 2xmx:A, 2xmx:B
6 3k3w:B 551 138 0.1232 0.0617 0.2464 4.6 3ml0:B
7 1d7r:A 431 44 0.0507 0.0325 0.3182 6.2 1d7s:A, 1d7u:A, 1d7v:A, 1dgd:A, 1dge:A, 1dka:A, 2dkb:A, 1m0n:A, 1m0o:A, 1m0p:A, 1m0q:A, 1z3z:A, 1zc9:A, 1zob:A, 1zod:A
8 8b6j:E 245 94 0.0942 0.1061 0.2766 6.9 8b6j:e, 8bqs:E, 8bqs:e, 8gym:qE, 8gym:qe, 8gym:QE, 8gym:Qe, 8gzu:qE, 8gzu:qe, 8gzu:QE, 8gzu:Qe, 7tgh:3E
9 1b8a:A 438 34 0.0543 0.0342 0.4412 7.9 1b8a:B, 3nel:A, 3nem:A, 3nem:B
10 6tm5:P 492 51 0.0507 0.0285 0.2745 8.9
11 8h3v:A 1077 73 0.0761 0.0195 0.2877 9.6 8h40:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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