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BioLiP
>protein
PICLVDGCDSDFSNCREYHKRHKVCDVHSKTPVVTINGHKQRFCQQCSRFHALEEFDEGKRSCR

The query sequence (length=64) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8j4b:D 65 64 1.0000 0.9846 1.0000 1.79e-43 8j4b:B
2 1ul4:A 81 63 0.5938 0.4691 0.6032 9.95e-24
3 8pfc:L 70 63 0.5469 0.5000 0.5556 2.51e-23 8j49:A, 8pfc:B, 8pfc:D, 8pfc:F, 8pfc:H, 8pfc:J, 8pfc:N, 8pfc:P
4 1wj0:A 58 55 0.5156 0.5690 0.6000 6.70e-21
5 1ul5:A 86 62 0.4844 0.3605 0.5000 1.61e-17
6 6tix:BBB 533 51 0.2344 0.0281 0.2941 1.5 6tix:AAA
7 8d41:A 307 29 0.1875 0.0391 0.4138 2.7 8d41:B
8 6exn:J 342 27 0.1719 0.0322 0.4074 2.9 5lj3:J, 5lj5:J, 5mps:J, 5mq0:J
9 6uej:A 212 20 0.1406 0.0425 0.4500 5.7 6uei:A
10 7r2g:B 351 30 0.1719 0.0313 0.3667 6.1 6cpm:C, 6cpm:D, 6crn:A, 6crn:B, 6crn:C, 6crn:D, 6gh9:A, 6gha:A, 6ml1:A, 6ml1:B, 7r2g:A
11 8rpr:A 338 47 0.2031 0.0385 0.2766 7.3 8ftr:A, 8fts:A, 8ftv:A, 8rww:A, 8rxf:A, 8rxg:A
12 8h2n:A 709 17 0.1406 0.0127 0.5294 7.9 8h2n:B, 8h2n:C, 8h2n:D
13 8aq8:AAA 344 22 0.1562 0.0291 0.4545 8.1 8aq8:BBB, 8aq8:CCC, 8aq8:DDD
14 7aju:UL 779 18 0.1562 0.0128 0.5556 8.7 5wyj:BB, 5wyk:BB, 6zqd:UL, 6zqe:UL, 6zqf:UL
15 7d5s:B2 851 18 0.1562 0.0118 0.5556 8.7 7ajt:UL, 7d4i:B2, 7d5t:B2, 7d63:B2, 6ke6:B2, 6lqp:B2, 6lqq:B2, 6lqr:B2, 6lqs:B2, 6lqt:B2, 6lqu:B2, 6lqv:B2, 7suk:LQ, 5wlc:LQ, 6zqa:UL, 6zqb:UL, 6zqc:UL
16 8bie:A 318 32 0.1250 0.0252 0.2500 9.2 8bie:B, 8bij:A, 8bij:B
17 8bgt:A 319 40 0.1719 0.0345 0.2750 9.2 8bgt:B, 8bgx:A, 8bgx:B, 8bgx:C, 8bgx:D, 8bgy:A, 8bgy:B, 8bgy:C, 8bgy:D, 8bgz:A, 8bgz:B, 8bgz:C, 8bgz:D, 8bh0:A, 8bh0:B, 8bh0:C, 8bh0:D, 8bh0:E, 8bh0:F, 8bh0:G, 8bh0:H, 8bib:A, 8bib:B, 8bib:C, 8bib:D, 8bid:A, 8bid:B, 8bid:C, 8bid:D, 8bih:A, 8bih:B, 8bih:C, 8bih:D, 8bih:E, 8bih:F, 8bih:G, 8bih:H, 8bih:I, 8bih:J, 8bih:K, 8bih:L

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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