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BioLiP
>protein
PIATGHEREEIQASLEGRDILEINHPEGPFGTKEAPAIVKSYFDRRIVGCPGGEGEDEHDVVWFWLENGKPHECPVCSQY
FELKVVGPGGDPYG

The query sequence (length=94) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7jro:e 94 94 1.0000 1.0000 1.0000 7.60e-66 7jrp:e
2 3abk:F 98 81 0.3723 0.3571 0.4321 6.12e-17 3abk:S, 3abl:F, 3abl:S, 3abm:F, 3abm:S, 3ag1:F, 3ag1:S, 3ag2:F, 3ag2:S, 3ag3:F, 3ag3:S, 3ag4:F, 3ag4:S, 3asn:F, 3asn:S, 3aso:F, 3aso:S, 5b1a:F, 5b1a:S, 5b1b:F, 5b1b:S, 5b3s:F, 5b3s:S, 7coh:F, 7coh:S, 7cp5:F, 7cp5:S, 8d4t:S, 7d5w:F, 7d5w:S, 7d5x:F, 7d5x:S, 7dgq:A5, 7dgr:A6, 7dgs:B2, 7dkf:F3, 2dyr:F, 2dyr:S, 2dys:F, 2dys:S, 2eij:F, 2eij:S, 2eik:F, 2eik:S, 2eil:F, 2eil:S, 2eim:F, 2eim:S, 2ein:F, 2ein:S, 7ev7:F, 7ev7:S, 8gbt:F, 8gbt:S, 8gcq:F, 8gcq:S, 5gup:Ap, 8gvm:F, 8gvm:S, 8h8r:F, 8h8r:S, 8h8s:F, 8h8s:S, 8ijn:F, 8ijn:S, 5iy5:F, 5iy5:S, 6j8m:F, 6j8m:S, 6juw:F, 6juw:S, 6jy3:F, 6jy4:F, 5luf:3, 6nkn:F, 6nkn:S, 6nmf:F, 6nmf:S, 6nmp:F, 6nmp:S, 1occ:F, 1occ:S, 1oco:F, 1oco:S, 1ocr:F, 1ocr:S, 1ocz:F, 1ocz:S, 2occ:F, 2occ:S, 7thu:F, 7thu:S, 7tie:F, 7tie:S, 7tih:F, 7tih:S, 7tii:F, 7tii:S, 8ugh:4F, 8ugi:4F, 8ugj:4F, 8ugj:8F, 8ugl:4F, 8ugn:4F, 8ugn:8F, 8ugr:4F, 8ugr:8F, 1v54:F, 1v54:S, 1v55:F, 1v55:S, 7vuw:F, 7vuw:S, 7vvr:F, 7vvr:S, 7w3e:F, 7w3e:S, 5w97:F, 5w97:f, 5wau:F, 5wau:f, 3wg7:F, 3wg7:S, 5x19:F, 5x19:S, 5x1b:F, 5x1b:S, 5x1f:F, 5x1f:S, 3x2q:F, 3x2q:S, 5xdq:F, 5xdq:S, 5xdx:F, 5xdx:S, 7xma:F, 7xma:S, 7xmb:F, 7xmb:S, 5xth:2, 5xti:2, 5xti:B2, 7y44:F, 7y44:S, 2y69:F, 2y69:S, 2ybb:Q, 7ypy:F, 7ypy:S, 5z84:F, 5z84:S, 5z85:F, 5z85:S, 5z86:F, 5z86:S, 5zco:F, 5zco:S, 5zcp:F, 5zcp:S, 5zcq:F, 5zcq:S, 2zxw:F, 2zxw:S
3 7o37:f 95 81 0.3617 0.3579 0.4198 3.74e-15 7o3c:f, 7o3e:f, 8pw5:s, 8pw5:f, 8pw6:s, 8pw7:s
4 8c8q:D 121 86 0.2979 0.2314 0.3256 2.95e-09 8q1b:d
5 8dh6:d 121 85 0.2872 0.2231 0.3176 1.53e-06 6hu9:d, 6hu9:p, 6t0b:d, 6t0b:q, 6t15:d, 6ymx:d, 6ymy:d, 7z10:d
6 8b6h:DD 558 58 0.2340 0.0394 0.3793 3.99e-04 8b6h:Dd, 8bqs:DD, 8bqs:Dd, 8gym:vb, 8gym:VB, 8gzu:29, 8gzu:84, 8gzu:vb, 8gzu:VB, 7w5z:5B, 7w5z:5b
7 7awt:G 907 15 0.0851 0.0088 0.5333 0.92 7nyr:G, 7nyu:G, 7nyv:G, 7nz1:G, 7p61:G, 7p62:G, 7p63:G, 7p64:G, 7p69:G, 7p7c:G, 7p7e:G, 7p7j:G, 7p7k:G, 7p7l:G, 7p7m:G, 7z7r:G, 7z7s:G, 7z7t:G, 7z7v:G, 7z80:G, 7z83:G, 7z84:G, 7zc5:G, 7zci:G
8 5ea2:C 276 38 0.1489 0.0507 0.3684 1.6 5a4k:A, 5a4k:B, 5a4k:C, 5a4k:D, 8c9j:A, 8c9j:B, 8c9j:C, 8c9j:D, 4cet:A, 4cf6:A, 4cf6:B, 1d4a:A, 1d4a:B, 1d4a:D, 1d4a:C, 1dxo:A, 1dxo:C, 1dxo:B, 1dxo:D, 5ea2:A, 5ea2:E, 5ea2:G, 5eai:A, 5eai:B, 5eai:C, 5eai:D, 5eai:E, 5eai:F, 5eai:G, 5eai:H, 5eai:I, 5eai:J, 5eai:K, 5eai:L, 5eai:M, 5eai:N, 2f1o:A, 2f1o:C, 2f1o:B, 2f1o:D, 2f1o:E, 2f1o:F, 2f1o:G, 2f1o:H, 5fuq:A, 5fuq:B, 6fy4:A, 6fy4:B, 6fy4:C, 6fy4:D, 1gg5:A, 1gg5:C, 1gg5:B, 1gg5:D, 1h66:A, 1h66:C, 1h66:B, 1h66:D, 1h69:A, 1h69:C, 1h69:B, 1h69:D, 3jsx:A, 3jsx:B, 3jsx:C, 3jsx:D, 3jsx:E, 3jsx:G, 3jsx:F, 3jsx:H, 1kbo:A, 1kbo:C, 1kbo:B, 1kbo:D, 1kbq:A, 1kbq:C, 1kbq:B, 1kbq:D, 6llc:A, 6llc:D, 6llc:B, 6llc:F, 6llc:C, 6llc:E, 6llc:G, 6llc:H, 6llc:I, 6llc:J, 6llc:K, 6llc:L, 8ok0:A, 8ok0:D, 8ok0:B, 8ok0:C, 8pqn:A, 8pqn:B, 8pqn:C, 8pqn:D, 1qbg:A, 1qbg:B, 1qbg:C, 1qbg:D, 8rfm:A, 8rfm:B, 8rfm:C, 8rfm:D, 8rfn:A, 8rfn:B, 8rfn:C, 8rfn:D
9 7msm:x 553 26 0.0957 0.0163 0.3462 2.6 7msc:x, 7msh:x, 7msz:x, 7mu0:A, 7mu0:B
10 8cn1:H 101 28 0.1064 0.0990 0.3571 3.8 8cn1:C, 8cn1:G, 8cn1:J, 8cn1:L, 8cn1:F, 8cn1:K, 8cn1:I, 3rl7:B
11 8r0s:A 470 36 0.1277 0.0255 0.3333 4.9
12 3flo:E 433 20 0.0957 0.0208 0.4500 7.7 3flo:G, 3flo:A, 3flo:C
13 2ka9:A 189 28 0.1170 0.0582 0.3929 8.3 8cn1:B, 8cn1:A, 8cn1:E, 8cn1:D, 2mho:A, 1rgr:A, 3rl7:A, 3rl7:F, 3rl7:D, 3rl7:C, 3rl7:E, 6spv:A, 6spz:A
14 8esw:S6 90 39 0.1489 0.1556 0.3590 8.7 8b9z:R, 8ba0:R, 8esz:S6

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218