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BioLiP
>protein
PHVKRPMNAFMVWAQAARRKLADQYPHLHNAELSKTLGKLWRLLNESEKRPFVEEAERLRVQHKKDHPDYKY

The query sequence (length=72) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4s2q:D 76 72 1.0000 0.9474 1.0000 2.00e-49 4euw:A
2 4y60:C 76 70 0.6944 0.6579 0.7143 1.35e-32
3 6l6y:D 80 70 0.6806 0.6125 0.7000 3.54e-32 4a3n:A, 3f27:D, 6l6y:F
4 6t78:A 77 71 0.6250 0.5844 0.6338 1.82e-31 6t78:B, 3u2b:C
5 1gt0:D 79 70 0.6250 0.5696 0.6429 4.69e-31 8bx1:E, 8bx2:E, 6ht5:D, 1o4x:B, 6t90:L, 6yov:L
6 2gzk:A 159 70 0.5000 0.2264 0.5143 1.94e-22 9bvd:C, 9bvd:F, 9bvd:I, 6cil:N, 6edb:B, 1hry:A, 1hrz:A, 1j46:A, 1j47:A, 6oem:N, 6oem:H, 6oen:N, 6oen:H, 6oeo:N, 6oer:H
7 2gzk:A 159 68 0.2778 0.1258 0.2941 9.13e-05 9bvd:C, 9bvd:F, 9bvd:I, 6cil:N, 6edb:B, 1hry:A, 1hrz:A, 1j46:A, 1j47:A, 6oem:N, 6oem:H, 6oen:N, 6oen:H, 6oeo:N, 6oer:H
8 7m5w:A 138 71 0.3611 0.1884 0.3662 5.17e-11 6jrp:A, 6jrp:D, 6jrp:G, 6jrp:J
9 2lef:A 86 69 0.2639 0.2209 0.2754 3.84e-06
10 1e7j:A 74 43 0.2083 0.2027 0.3488 7.02e-06 3nm9:D, 3nm9:G, 3nm9:J, 3nm9:P, 3nm9:M, 3nm9:A, 1qrv:A, 1qrv:B, 8r1x:A
11 5jh0:D 157 62 0.2639 0.1210 0.3065 3.91e-05 5jgh:A, 5jgh:D, 5jgh:G, 5jgh:J, 5jh0:A
12 5jh0:D 157 52 0.2083 0.0955 0.2885 0.002 5jgh:A, 5jgh:D, 5jgh:G, 5jgh:J, 5jh0:A
13 6cik:N 90 63 0.2639 0.2111 0.3016 5.08e-05 6cg0:N, 6cim:N
14 6cij:N 133 63 0.2778 0.1504 0.3175 2.66e-04 5zdz:N, 5ze1:N, 5ze2:N
15 1j5n:A 93 54 0.2222 0.1720 0.2963 4.09e-04
16 6bnn:A 282 21 0.1528 0.0390 0.5238 1.1 6bnx:A, 6bnz:A, 5d7z:A
17 8w06:B 251 54 0.2222 0.0637 0.2963 1.4 8v09:A, 8v0a:B, 8w06:A, 8w06:C, 8w06:D, 8w06:E, 8w06:F, 8w06:G, 8w06:H
18 6nee:B 252 36 0.1806 0.0516 0.3611 1.7 6nee:A
19 2w4l:E 162 27 0.1389 0.0617 0.3704 4.0 2w4l:A, 2w4l:B, 2w4l:D, 2w4l:F
20 4ayx:A 571 27 0.1806 0.0228 0.4815 6.0 4ayt:A, 4ayw:A, 7y48:B, 3zdq:A
21 4pdd:A 303 39 0.1389 0.0330 0.2564 6.6 4pdd:B, 4pdd:C

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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