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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
PHRLVVPFFKIEPSPEESRSNIKGLLQHLRTMVSSMHYKLDEVLWEYNKFESAVTLAEGEGSGALLLIQKYGVKKLFLNT
LATEHSIESEVISGYTTPRMLLPIMPKTHRGELEVILNNSASQITDITHRDWFSNQKNRIPNDADIITMDAETTENLDRS
RLYEAVYTIICNHINPKTLKVVILKVFLSDLDGMCWINNYLAPMFGSGYLIKPITSSAKSSEWYLCLSNLLSTLRTTQHQ
TQANCLHVVQCALQQQVQRGSYWLHHLT

The query sequence (length=268) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6yu8:A 268 268 1.0000 1.0000 1.0000 0.0
2 6k32:A 1208 72 0.0858 0.0190 0.3194 0.34 3jb7:A, 6ty9:A, 6tz1:A, 6tz2:A
3 3jb6:A 1196 72 0.0858 0.0192 0.3194 0.35 5h0r:F, 6ty8:A
4 6ueb:A 2099 139 0.1306 0.0167 0.2518 1.6
5 5z9s:A 765 84 0.0933 0.0327 0.2976 3.5 5z9s:B
6 8hyj:A 1141 114 0.1157 0.0272 0.2719 3.5
7 2x2t:A 152 104 0.1082 0.1908 0.2788 3.6
8 8g04:B 398 55 0.0560 0.0377 0.2727 4.7 8g04:C
9 8jxu:A 1410 84 0.1007 0.0191 0.3214 5.8 8jxq:A
10 4h6z:A 147 45 0.0672 0.1224 0.4000 7.4 4h6z:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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