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BioLiP
>protein
PHMPPLPPGWEEKVDNLGRTYYVNHNNRTTQWHRPSL

The query sequence (length=37) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7lp3:A 37 37 1.0000 1.0000 1.0000 1.07e-22 7lp3:C
2 7lp2:E 37 35 0.7297 0.7297 0.7714 1.13e-14 2lb2:A, 7lp2:A, 7lp2:C, 2lty:A
3 2n8t:A 39 32 0.5405 0.5128 0.6250 5.11e-12
4 5dws:C 40 33 0.5405 0.5000 0.6061 9.26e-11
5 5cq2:A 76 31 0.5405 0.2632 0.6452 2.51e-10 5dws:A, 5dws:E, 5dws:G, 5dzd:A, 5dzd:B, 2jo9:A, 4rof:A, 4rof:B
6 5cq2:A 76 31 0.4054 0.1974 0.4839 0.002 5dws:A, 5dws:E, 5dws:G, 5dzd:A, 5dzd:B, 2jo9:A, 4rof:A, 4rof:B
7 2lb1:A 35 35 0.5405 0.5714 0.5714 2.95e-09 2ltx:A
8 2djy:A 42 33 0.5405 0.4762 0.6061 4.17e-09
9 1i5h:W 50 35 0.4595 0.3400 0.4857 4.90e-09
10 2kxq:A 90 36 0.5405 0.2222 0.5556 1.19e-08 2laz:A, 2lb0:A, 2ltz:A
11 2kxq:A 90 34 0.2703 0.1111 0.2941 0.048 2laz:A, 2lb0:A, 2ltz:A
12 4lcd:A 419 37 0.4595 0.0406 0.4595 9.12e-08 4lcd:B
13 2ltv:A 36 33 0.4595 0.4722 0.5152 9.99e-08 2law:A
14 6jjy:A 128 31 0.4865 0.1406 0.5806 3.22e-07 6j68:A, 6j68:B, 6j69:A, 6jjw:A, 6jjx:B, 6jjx:A
15 6jjy:A 128 32 0.3784 0.1094 0.4375 0.005 6j68:A, 6j68:B, 6j69:A, 6jjw:A, 6jjx:B, 6jjx:A
16 8sg2:A 163 32 0.4595 0.1043 0.5312 7.09e-07 6dun:A, 6dun:B, 7efj:A, 7efx:A, 7ekv:A, 7f0m:A, 7f0m:C, 7f0m:B, 7f0m:D, 1f8a:B, 4gwv:A, 3i6c:A, 3i6c:B, 1i8g:B, 1i8h:B, 3ikd:A, 3ikd:B, 3ikg:A, 3ikg:B, 9inr:A, 9inr:B, 2itk:A, 3jyj:A, 3jyj:B, 3kab:A, 3kac:A, 3kac:B, 3kad:A, 3kaf:A, 3kag:A, 3kah:A, 3kai:A, 3kce:A, 2lb3:A, 2n1o:A, 1nmw:A, 3ntp:A, 6o33:A, 6o34:A, 3odk:A, 3oob:A, 1pin:A, 2q5a:A, 3tc5:A, 3tcz:A, 3tdb:A, 4tns:A, 4tyo:A, 4tyo:B, 5uy9:A, 6vaj:A, 3wh0:A, 2xp3:A, 2xp4:A, 2xp5:A, 2xp6:A, 2xp7:A, 2xp8:A, 2xp9:A, 2xpa:A, 2xpb:A
17 2laj:A 40 32 0.4054 0.3750 0.4688 3.98e-06
18 2nc3:A 33 31 0.4054 0.4545 0.4839 1.18e-05 2nc4:A, 2nc5:A, 2nc6:A
19 2jmf:A 43 31 0.3784 0.3256 0.4516 3.43e-05
20 1jmq:A 46 35 0.4054 0.3261 0.4286 5.69e-05 1k5r:A, 1k9q:A, 1k9r:A, 2lax:A, 2lay:A, 2ltw:A
21 2m3o:W 43 32 0.3784 0.3256 0.4375 1.27e-04 2kpz:A, 2kq0:A, 2mpt:A, 4n7h:A
22 6jjz:B 96 33 0.3784 0.1458 0.4242 1.31e-04 6jjz:A, 6kkg:A, 6kkg:B
23 6jjz:B 96 32 0.4595 0.1771 0.5312 2.24e-04 6jjz:A, 6kkg:A, 6kkg:B
24 2ez5:W 46 31 0.3784 0.3043 0.4516 1.37e-04
25 1eg4:A 260 28 0.2703 0.0385 0.3571 0.074
26 3sy9:B 372 16 0.2162 0.0215 0.5000 0.85 3sy9:A, 3sy9:C, 3sy9:D
27 5l9w:b 649 14 0.1892 0.0108 0.5000 1.3
28 2og6:A 323 30 0.3243 0.0372 0.4000 1.4 2og7:A
29 8pxx:A 99 26 0.2703 0.1010 0.3846 1.7 2dyf:A
30 8pxx:A 99 26 0.2162 0.0808 0.3077 2.0 2dyf:A
31 5wde:A 320 31 0.2432 0.0281 0.2903 1.7
32 2oei:A 37 31 0.3784 0.3784 0.4516 2.3 2ho2:A
33 5bz4:K 400 27 0.3243 0.0300 0.4444 3.8 5bz4:B, 5bz4:D, 5bz4:F, 5bz4:H
34 2db3:A 420 30 0.2703 0.0238 0.3333 4.4 2db3:B, 2db3:C, 2db3:D
35 8snb:6M 391 28 0.2973 0.0281 0.3929 6.6
36 2jup:W 37 26 0.2432 0.2432 0.3462 7.4 2rly:W, 2rm0:W
37 7kq5:A 265 26 0.2162 0.0302 0.3077 9.5 3dkt:A, 3dkt:B, 3dkt:C, 3dkt:D, 3dkt:E, 3dkt:F, 3dkt:G, 3dkt:H, 3dkt:I, 3dkt:J, 7lik:A, 7lis:A, 7lit:A, 7mu1:A, 6wkv:A, 6wkv:f, 6wkv:B, 6wkv:Q, 6wkv:C, 6wkv:I, 6wkv:D, 6wkv:H, 6wkv:s, 6wkv:E, 6wkv:v, 6wkv:F, 6wkv:W, 6wkv:G, 6wkv:V, 6wkv:o, 6wkv:P, 6wkv:J, 6wkv:3, 6wkv:M, 6wkv:Z, 6wkv:S, 6wkv:N, 6wkv:i, 6wkv:O, 6wkv:l, 6wkv:e, 6wkv:R, 6wkv:T, 6wkv:p, 6wkv:2, 6wkv:X, 6wkv:8, 6wkv:Y, 6wkv:b, 6wkv:0, 6wkv:4, 6wkv:L, 6wkv:1, 6wkv:5, 6wkv:k, 6wkv:K, 6wkv:6, 6wkv:c, 6wkv:7, 6wkv:U, 6wkv:a, 6wkv:9, 6wkv:q, 6wkv:j, 6wkv:d, 6wkv:x, 6wkv:u, 6wkv:h, 6wkv:m, 6wkv:t, 6wkv:g, 6wkv:n, 6wkv:w, 6wkv:r

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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