Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
PHEVFVELNELLLDKNQEPQWRETARWIKFEEDVEEETERWGKPHVASLSFRSLLELRRTLAHGAVLLDLDQQTLPGVAH
QVVEQMVISDQIKAEDRANVLRALLLKHSHPSDKSKHELKLLEKIPENAEATVVLVGCVEFLSRPTMAFVRLREAVELDA
VLEVPVPVRFLFLLLGPSSANMDYHEIGRSISTLMSDKQFHEAAYLADEREDLLTAINAFLDCSVVLPPSEVQGEELLRS
VAHFQRQMLKKREEQGRDPLRRTGRPFGGLIRDVRRRYPHYLSDFRDALDPQCLAAVIFIYFAALSPAITFGGLLGEKTQ
DLIGVSELIMSTALQGVVFCLLGAQPLLVIGFSGPLLVFEEAFFSFCSSNHLEYLVGRVWIGFWLVFLALLMVALEGSFL
VRFVSRFTQEIFAFLISLIFIYETFYKLVKIFQEHPLHGCPRGQPNTALLSLVLMAGTFFIAFFLRKFKNSRFFPGRIRR
VIGDFGVPIAILIMVLVDYSIEDTYTQKLSVPSGFSVTAPEKRGWVINPLGEKSPFPVWMMVASLLPAILVFILIFMETQ
ITTLIISKKERMLQKGSGFHLDLLLIVAMGGICALFGLPWLAAATVRSVTHANALTVMSKAVAPGDKPKIQEVKEQRVTG
LLVALLVGLSIVIGDLLRQIPLAVLFGIFLYMGVTSLNGIQFYERLHLLLMPPKHHPDVTYVKKVRTLRMHLFTALQLLC
LALLWAVMSTAASLAFPFILILTVPLRMVVLTRIFTDREMKCLDANEAEPVFDEREGVDEYNEMPMPV

The query sequence (length=788) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8gvh:A 788 788 1.0000 1.0000 1.0000 0.0 8gv8:A, 8gv8:B, 8gvh:B, 8jni:B, 8jni:A, 8zle:A, 8zle:B
2 8cs9:g 832 809 0.6383 0.6046 0.6218 0.0 8cs9:V, 8cs9:e, 8cs9:Y, 8cs9:f, 8cs9:Z, 8cte:P, 8cte:T, 7v0k:O, 7v0k:P
3 7tvz:A 850 832 0.6396 0.5929 0.6058 0.0 8crq:C, 8crq:E, 8crr:C, 8crr:E, 8crt:C, 8crt:E, 8ct3:C, 8ct3:E, 8t3r:B, 8t44:B, 8t47:B, 8t47:A, 8t6u:A, 8t6u:B, 8t6v:A, 8t6v:B, 7tvz:B, 7ty4:A, 7ty4:B, 7ty6:A, 7ty6:B, 7ty7:A, 7ty7:B, 7ty8:A, 7ty8:B, 7tya:A, 7tya:B, 7uz3:C, 7uz3:E, 7v07:C, 7v07:E, 7v19:C, 7v19:E
4 8y85:A 514 514 0.4822 0.7393 0.7393 0.0 8y85:B, 8y86:A
5 4yzf:A 475 496 0.4543 0.7537 0.7218 0.0 4yzf:B, 4yzf:C, 4yzf:D
6 8t45:A 460 489 0.4251 0.7283 0.6851 0.0 8t3r:A, 8t3u:A, 8t3u:B, 8t44:A, 8t45:B
7 7rtm:A 571 560 0.2919 0.4028 0.4107 1.18e-138 7rtm:B
8 7x1i:A 678 624 0.2424 0.2817 0.3061 1.80e-61 7x1i:B, 7x1j:B, 7x1j:A
9 8teg:A 539 533 0.1878 0.2746 0.2777 2.34e-53
10 4x2z:A 301 72 0.0254 0.0664 0.2778 3.0 5bz0:A
11 7olc:Sb 81 75 0.0279 0.2716 0.2933 4.2 7old:Sb, 8oo0:Sb, 7r81:c2, 6rxx:Cq, 7z3n:Sb, 7z3o:Sb
12 8tgi:A 385 76 0.0305 0.0623 0.3158 4.3 8tgg:A, 8tgg:B, 8tgh:A, 8tgh:B, 8tgi:B, 8tgj:B, 8tgk:A, 8tgk:B, 8tgl:B, 8tgm:A, 8tgm:B, 8tgn:A, 8tgn:B
13 4pe5:D 727 103 0.0355 0.0385 0.2718 4.8 4pe5:B

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218