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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
PGYHAPVADPFAEHRPPKIADREDEYKKHRRTMIISAEKAKAGELKVVNGAAASDQTPGATPKKLSSWDQAETPGHTPSL
RWDETPGRAKGSETPGATPGSKIWDPTPSAETPRTDRGGDSIGETPTPGASKRKERNRPLSDEELDAMFPEGYKVLPPPA
GYVPIRTPARKLTATPTPLGGMTGFHMQTEMKSVNDQPSGNLPFLKPDDIQYFDKLLVDVDESEEQKERKIMKLLLKIKN
GTPPMRKAALRQITDKAREFGAGPLFNQILPLLMSPTLEDQERHLLVKVIDRILYKLDDLVRPYVHKILVVIEPLLIDED
YYARVEGREIISNLAKAAGLATMISTMRPDIDNMDEYVRNTTARAFAVVASALGIPSLLPFLKAVCKSKKSWQARHTGIK
IVQQIAILMGCAILPHLRSLVEIIEHGLVDEQQKVRTISALAIAALAEAATPYGIESFDSVLKPLWKGIRQHRGKGLAAF
LKAIGYLIPLMDAEYANYYTREVMLILIREFQSPDEEMKKIVLKVVKQCCGTDGVEANYIKTEILPPFFKHFWQHRMALD
RRNYRQLVDTTVELANKVGAAEIISRIVDDLKDEAEQYRKMVMETIEKIMGNLGAADIDHKLEEQLIDGILYAFQEQTTE
DSVMLNGFGTVVNALGKRVKPYLPQICGTVLWRLNNKSAKVRQQAADLISRTAVVMKTCQEEKLMGHLGVVLYEYLGEEY
PEVLGSILGALKAIVNVIGMHKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGAEYVSAREWMRICFELLELL
KAHKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNVQNG
VLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTASAVVQHMSLGVYGFGCEDSLNHLLNYVWPNVFETSPHV
IQAVMGALEGLRVAIGPCRMLQYCLQGLFHPARKVRDVYWKIYNSIYIGSQDALIAHYPRIYNDDKNTYIRYELDYIL

The query sequence (length=1038) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6ahd:1 1048 1058 0.9894 0.9800 0.9707 0.0 7abg:u, 7abh:u, 7abi:u, 6ah0:1, 7b0i:C, 7b91:C, 7b9c:C, 8ch6:C, 7dvq:1, 6en4:C, 7evo:1, 6ff4:u, 6ff7:u, 8h6e:2G, 8h6j:2G, 8h6k:2G, 8h6l:2G, 8hk1:1, 8i0p:1, 8i0r:1, 8i0s:1, 8i0t:1, 8i0u:1, 7omf:C, 7onb:C, 7opi:C, 7q3l:A, 7q4o:A, 7q4p:A, 8qo9:B1, 7qtt:C, 6qx9:B1, 8qxd:B1, 8qzs:B1, 8r08:B1, 8r09:B1, 8r0a:B1, 8r0b:B1, 8rm5:B1, 7vpx:1, 6y50:u, 6y5q:u, 8y7e:1, 5z56:1, 5z57:1, 5z58:1, 5zya:C
2 7dco:1 930 849 0.4374 0.4882 0.5347 0.0 6g90:O, 5gm6:G, 5nrl:O, 5zwm:1, 5zwo:1
3 5lqw:Q 791 819 0.4066 0.5335 0.5153 0.0
4 6nts:A 583 634 0.1252 0.2230 0.2050 1.43e-04 6iur:F, 8twe:A
5 5yvg:A 830 116 0.0308 0.0386 0.2759 0.11 2h4m:B, 2ot8:B, 5yvh:A
6 8sgh:A 844 116 0.0308 0.0379 0.2759 0.11 7cyl:A, 4fdd:A, 4fq3:A, 2h4m:A, 5j3v:A, 5j3v:B, 4jlq:A, 4oo6:A, 2ot8:A, 5tqc:A, 7vpw:A, 5yvi:A, 2z5k:A, 2z5m:A, 2z5n:A, 2z5o:A
7 6xu2:A 1091 359 0.0723 0.0687 0.2089 0.28 6xte:A
8 6rxu:UT 2033 51 0.0164 0.0084 0.3333 0.48 6rxv:UT, 6rxx:UT, 6rxz:UT
9 7zke:E 1623 109 0.0222 0.0142 0.2110 0.95
10 7z8s:E 1514 109 0.0222 0.0152 0.2110 1.0 7zb5:E, 7zb5:H
11 4yiv:A 374 88 0.0241 0.0668 0.2841 1.2
12 7z7n:E 1306 109 0.0222 0.0176 0.2110 1.2
13 3oqg:A 176 102 0.0289 0.1705 0.2941 3.6 3oqg:B, 3or3:A, 3or3:B
14 2apg:A 517 83 0.0193 0.0387 0.2410 4.1 2aqj:A, 2ar8:A, 2ard:A, 2jkc:A, 4z43:A, 4z44:A
15 8dq3:D 297 30 0.0125 0.0438 0.4333 6.5 8dq3:A, 8dq3:B, 8dq3:C
16 8ayh:B 951 99 0.0241 0.0263 0.2525 7.1 3frp:A, 3hrz:A, 3hs0:A, 3hs0:F
17 4c3o:A 583 121 0.0328 0.0583 0.2810 7.8 4c3o:C, 4c3o:E
18 1f1u:A 322 70 0.0222 0.0714 0.3286 7.9 1f1r:A, 1f1r:B, 1f1u:B, 1f1v:A, 1f1v:B
19 7miz:c 201 86 0.0222 0.1144 0.2674 8.7 7miz:d, 7miz:e, 7miz:f, 7miz:g, 7miz:h, 7miz:j, 7miz:o, 7miz:p, 7miz:q, 7miz:r, 7miz:s, 7miz:t, 7miz:u, 7miz:v, 7miz:n, 7miz:m, 7tnq:c, 7tnq:d, 7tnq:o, 7tnq:p, 7tnq:r, 7tnq:t, 7tnq:u, 7tnq:v, 7tnq:e, 7tnq:m, 7tnq:f, 7tnq:h, 7tnq:i, 7tns:c, 7tns:d, 7tns:o, 7tns:s, 7tns:t, 7tns:v, 7tns:y, 7tns:m, 7tns:f, 7tns:g, 7tns:h

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218