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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
PGVSVRDVAAQDFINAYASFLQRQGKLEVPGYVDIVKTSSGNEMPPQDAEGWFYKRAASVARHIYMRKQVGVGKLNKLYG
GAKSRGVRPYKHIDASGSINRKVLQALEKIGIVEISPKGGRRISENGQRDLDRIAAQTLEE

The query sequence (length=141) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4v6i:AS 144 141 1.0000 0.9792 1.0000 8.37e-102 7a1g:J, 7aju:DT, 7b7d:I, 8bn3:C9, 8bqd:I, 8bqx:I, 8c00:I, 8c01:I, 8cah:J, 8cas:K, 8cbj:T, 8ccs:v, 8cdl:v, 8cdr:v, 8ceh:v, 8cf5:v, 8cg8:v, 8cgn:v, 8civ:v, 8cku:v, 8cmj:v, 7d4i:SU, 7d63:SU, 5dat:C9, 5dat:c9, 5dc3:C9, 5dc3:c9, 5dge:C9, 5dge:c9, 5dgf:C9, 5dgf:c9, 5dgv:C9, 5dgv:c9, 6eml:I, 8eub:BT, 8evp:BT, 8evq:BT, 8evr:BT, 8evs:BT, 8evt:BT, 8ewb:BT, 8ewc:BT, 6fai:T, 5fci:C9, 5fci:c9, 5fcj:C9, 5fcj:c9, 6gq1:AJ, 6gqb:AJ, 6gqv:AJ, 6hhq:U, 6hhq:c9, 5i4l:C9, 5i4l:c9, 6i7o:I, 6i7o:Ib, 3j6x:19, 3j6y:19, 3j77:19, 3j78:19, 5juo:QB, 5jup:QB, 5jus:QB, 5jut:QB, 5juu:QB, 8k2d:ST, 8k82:ST, 5lyb:C9, 5lyb:c9, 5m1j:T2, 5mc6:I, 5mei:c9, 5mei:U, 7mpi:BT, 7mpj:BT, 7n8b:BT, 5ndg:C9, 5ndg:c9, 5ndv:C9, 5ndv:c9, 5ndw:C9, 5ndw:c9, 7nrc:SI, 7nrd:SI, 5obm:C9, 5obm:c9, 5on6:c9, 5on6:U, 7osa:eS19, 7osm:eS19, 6q8y:I, 6rbd:T, 6rbe:T, 7rr5:ST, 6s47:BU, 6snt:T, 6sv4:I, 6sv4:Ib, 6sv4:Ic, 6t4q:ST, 6t7i:ST, 6t7t:ST, 6t83:Tb, 6t83:u, 5tbw:U, 5tbw:c9, 6tb3:I, 5tga:C9, 5tga:c9, 5tgm:C9, 5tgm:c9, 6tnu:I, 4u3m:C9, 4u3m:c9, 4u3n:C9, 4u3n:c9, 4u3u:C9, 4u3u:c9, 4u4n:C9, 4u4n:c9, 4u4o:C9, 4u4o:c9, 4u4q:C9, 4u4q:c9, 4u4r:C9, 4u4r:c9, 4u4u:C9, 4u4u:c9, 4u4y:C9, 4u4y:c9, 4u4z:C9, 4u4z:c9, 4u50:C9, 4u50:c9, 4u51:C9, 4u51:c9, 4u52:C9, 4u52:c9, 4u53:C9, 4u53:c9, 4u55:C9, 4u55:c9, 4u56:C9, 4u56:c9, 4u6f:C9, 4u6f:c9, 4uer:T, 4v7h:AT, 4v88:AT, 4v88:CT, 4v8y:AT, 4v8z:AT, 4v92:BT, 6wdr:T, 6woo:TT, 6xiq:AJ, 6xir:AJ, 8y0u:ST, 6y7c:T, 6z6j:ST, 6z6k:ST, 6zce:U, 7zpq:AT, 6zqd:DT, 6zqe:DT, 6zqf:DT, 6zqg:DT, 7zrs:AT, 6zu9:K, 7zuw:AT, 7zux:DT, 6zvi:B, 7zw0:sI
2 6fyx:T 143 141 0.8865 0.8741 0.8865 2.61e-92 6fyy:T, 6gsm:T, 6gsn:T, 8i7j:T, 5it7:T, 5it9:T, 3j80:T, 3j81:T, 3jam:T, 3jap:T, 8rw1:T, 8s8d:T, 8s8e:T, 8s8f:T, 8s8g:T, 8s8h:T, 8s8i:T, 8s8j:T, 6uz7:T
3 8c3a:V 141 141 0.8652 0.8652 0.8652 7.32e-91 8c3a:DG, 8cq7:V, 8cq7:DG, 8cqw:V, 8cqw:DG, 8cre:V, 8cre:DG, 8oeq:V, 8oeq:DG, 7pzy:U, 7q08:U, 7q0f:U, 7q0p:U, 7q0r:U, 8q5i:U
4 7r81:U2 143 140 0.6454 0.6364 0.6500 1.08e-62
5 4v7r:AM 106 141 0.7305 0.9717 0.7305 3.96e-62 4v7r:CM
6 7olc:ST 142 141 0.6312 0.6268 0.6312 1.20e-60 7old:ST, 8oo0:ST, 6rxx:Cr, 7z3n:ST, 7z3o:ST
7 4v3p:SS 146 135 0.4610 0.4452 0.4815 1.19e-45 8ip8:ra, 8ip9:ra, 8ipa:ra, 8ipb:ra, 8jiw:BT, 8r57:T, 4v7e:BT
8 7qiy:K 140 137 0.4823 0.4857 0.4964 1.44e-45 8auv:E, 8b2l:E1, 7qiz:UA
9 5a2q:T 145 137 0.5035 0.4897 0.5182 1.77e-45 7a01:H5, 7a09:x, 5aj0:BT, 9bdl:AS19, 9bdn:AS19, 9bdp:AS19, 8bhf:U3, 9bkd:d, 9bln:d, 8btk:As, 7cpu:ST, 7cpv:ST, 4d5l:T, 4d61:T, 6d90:UU, 6d9j:UU, 9f1b:As, 9f1c:As, 9f1d:As, 6fec:R, 5flx:T, 6g18:T, 6g4s:T, 6g4w:T, 6g51:T, 6g53:T, 6g5h:T, 6g5i:T, 8g5y:ST, 8g5z:ST, 8g60:ST, 8g61:ST, 8g6j:ST, 8glp:ST, 6gz3:BT, 6gz4:BT, 6gz5:BT, 6hcf:U1, 6hcj:U2, 6hcm:U1, 6hcq:U2, 8ifd:20, 8ife:20, 6ip5:20, 6ip6:20, 6ip8:20, 3j7p:ST, 3j7r:ST, 3jag:TT, 3jah:TT, 3jai:TT, 3jaj:ST, 3jan:ST, 8jdj:AF, 8jdk:AF, 8jdl:AF, 8jdm:AF, 7jqb:U, 7jqc:U, 5k0y:R, 8k2c:ST, 7k5i:T, 4kzx:T, 4kzy:T, 4kzz:T, 5lks:ST, 7ls1:B3, 7ls2:B3, 5lzs:TT, 5lzt:TT, 5lzu:TT, 5lzv:TT, 5lzw:TT, 5lzx:TT, 5lzy:TT, 5lzz:TT, 7mdz:TT, 7mqa:NP, 6mtb:TT, 6mtc:TT, 6mtd:TT, 6mte:TT, 7nwg:U2, 7nwh:TT, 7nwi:TT, 7o7y:As, 7o7z:As, 7o80:As, 7o81:As, 5oa3:T, 6ole:ST, 6olf:ST, 6olg:BT, 6oli:ST, 6olz:BT, 6om0:ST, 6om7:ST, 7oyc:T2, 7oyd:TT, 8oz0:l, 8p03:V, 8p09:V, 8p2k:As, 6p4g:U, 6p4h:U, 6p5i:U, 6p5j:U, 6p5k:U, 6p5n:U, 8pj1:d, 8pj2:d, 8pj3:d, 8pj4:d, 8pj5:d, 8pj6:d, 8ppk:T, 8ppl:AT, 8q7z:As, 8q87:As, 7qgg:ST, 8qoi:ST, 7qp6:d, 7qp7:d, 7qvp:ST, 7qvp:RT, 6qzp:ST, 7r4x:T, 6r5q:PP, 6r6g:PP, 6r6p:PP, 6r7q:PP, 8scb:TT, 6sgc:U1, 7syg:U, 7syh:U, 7syi:U, 7syj:U, 7syk:U, 7syl:U, 7sym:U, 7syn:U, 7syo:U, 7syp:U, 7syq:U, 7syr:U, 7sys:U, 7syt:U, 7syu:U, 7syv:U, 7syw:U, 7syx:U, 5t2c:AU, 8t4s:T, 7toq:AS19, 7tor:AS19, 7tql:U, 7ucj:TT, 7uck:TT, 4ug0:ST, 4ujc:CT, 4ujd:CT, 4uje:BT, 4v6x:AT, 5vyc:T1, 5vyc:T2, 5vyc:T3, 5vyc:T4, 5vyc:T5, 5vyc:T6, 6w2s:U, 6w2t:U, 7wtt:T, 7wtu:T, 7wtv:T, 7wtw:T, 7wtx:T, 7wtz:T, 7wu0:T, 6xa1:ST, 7xnx:ST, 7xny:ST, 8xsx:ST, 8xsy:ST, 8xsz:ST, 8xxl:ST, 8xxm:ST, 8xxn:ST, 6y0g:ST, 8y0w:ST, 8y0x:ST, 6y2l:ST, 6y57:ST, 6yal:V, 6yam:V, 6yan:V, 6ybs:d, 8yoo:ST, 8yop:ST, 6z6l:ST, 6z6m:ST, 6z6n:ST, 7zjw:Se, 7zjx:Se, 6zlw:U, 6zm7:ST, 6zme:ST, 6zmi:ST, 6zmo:ST, 6zmt:U, 6zmw:d, 6zn5:U, 6zoj:T, 6zol:T, 6zon:x, 6zp4:x, 6zuo:T, 6zv6:T, 6zvh:T, 6zvj:x, 6zvk:H5, 6zxd:T, 6zxe:T, 6zxf:T, 6zxg:T, 6zxh:T
10 7oya:T2 137 134 0.5035 0.5182 0.5299 1.60e-44 7oyb:T2
11 4v6w:AT 154 139 0.4823 0.4416 0.4892 6.43e-41 6xu6:AT, 6xu7:AT, 6xu8:AT
12 6zj3:SX 143 135 0.4752 0.4685 0.4963 2.30e-38
13 5xxu:T 151 136 0.4326 0.4040 0.4485 2.21e-37
14 9bh5:AT 140 136 0.4326 0.4357 0.4485 1.61e-33 9cai:AT
15 4bts:AT 154 139 0.3688 0.3377 0.3741 6.50e-28 4bts:BT, 4bts:CT, 4bts:DT, 4v5o:AT, 4v5o:BT
16 3j7a:Y 154 133 0.3475 0.3182 0.3684 6.98e-26 3jbn:Y, 3jbo:Y, 3jbp:Y, 6okk:Y, 8tpu:SY
17 6az1:X 152 136 0.3475 0.3224 0.3603 2.13e-25 8a3w:SX, 8a98:SX, 8ovj:SX, 8rxh:SX, 8rxx:SX, 5t2a:AO
18 7ase:O 140 133 0.3333 0.3357 0.3534 4.85e-25 5opt:o
19 8hkx:S19E 150 140 0.3830 0.3600 0.3857 1.15e-24 8hky:S19E, 8hkz:S19E, 8hl1:S19E, 8hl2:S19E, 8hl3:S19E, 8hl4:S19E, 8hl5:S19E, 8wkp:S19E, 8wq2:S19E, 8wq4:S19E
20 5xyi:T 146 137 0.3475 0.3356 0.3577 1.69e-24
21 8ova:AO 154 134 0.3262 0.2987 0.3433 5.97e-23 8ove:AO, 4v8m:AO
22 6sw9:U 149 138 0.3688 0.3490 0.3768 1.48e-22 5jb3:U, 5jbh:U, 6swc:U, 6swe:U, 4v4n:BU, 4v6u:AU, 7zag:U, 7zah:U, 7zai:U, 7zhg:U
23 6skf:Av 149 138 0.3688 0.3490 0.3768 3.09e-22 6skg:Av, 6th6:Av, 6tmf:V
24 6zu5:ST0 139 124 0.3333 0.3381 0.3790 6.07e-22
25 8bsi:SW 138 134 0.3121 0.3188 0.3284 6.47e-17 8br8:SW, 8brm:SW, 8bsj:SW, 8btd:SW, 8btr:SW, 8fvy:T, 8g4s:T, 7pwf:T, 7pwo:T1
26 8p5d:ST0 142 113 0.3191 0.3169 0.3982 2.27e-15 8p60:ST0, 8p60:RT0, 7qca:ST0
27 7qep:C9 135 114 0.2695 0.2815 0.3333 5.66e-14
28 6rm3:ST0 131 107 0.2340 0.2519 0.3084 1.54e-12
29 7aor:z 1071 66 0.1489 0.0196 0.3182 0.075
30 4gu7:A 310 79 0.1418 0.0645 0.2532 1.9 4gu7:B, 4gu7:C, 4gu7:D, 8pws:A, 8pws:B, 8pws:C, 8pws:D, 8pws:E, 8pws:F, 8pwy:A, 8pwy:B, 8pwy:C, 8pwy:D, 8pwy:E, 8pwy:F, 7qze:A, 7qze:B, 7qze:C, 7qze:D, 7qze:E, 7qze:F, 7qzf:A, 7qzf:B, 7qzf:C, 7qzf:D, 7qzf:E, 7qzf:F, 7qzg:A, 7qzg:B, 7qzg:C, 7qzg:D, 7qzg:E, 7qzg:F, 7qzh:A, 7qzh:B, 7qzh:C, 7qzh:D, 7qzh:E, 7qzh:F, 8rwy:A, 8rwy:B, 8rwy:C, 8rwy:D, 8rwy:E, 8rwy:F, 6yr4:A, 6yr4:B, 6yr4:C, 6yr4:D, 6yr4:E, 6yr4:F, 6yrc:A, 6yrc:B, 6yrc:C, 6yrc:D, 6yrc:E, 6yrc:F, 6yrd:A, 6yrd:B, 6yrd:C, 6yrd:D, 6yrd:E, 6yrd:F, 6yrj:A, 6yrj:B, 6yrj:C, 6yrj:D, 6yrj:E, 6yrj:F, 7zmj:A, 7zmj:B, 7zmj:C, 7zmj:D, 7zmj:E, 7zmj:F
31 1iru:K 199 35 0.0993 0.0704 0.4000 2.0 1iru:Y
32 8hgw:A 288 76 0.1277 0.0625 0.2368 4.0 8hgw:B, 8hgw:C, 8hgw:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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