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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
PGSLTIAGSGIASIGHITLETLALIKEADKIFYAVTDPATECYIQENSRGDHFDLTTFYDTNKKRYESYVQMSEVMLRDV
RAGRNVLGIFYGHPGVFVAPSHRAIAIAREEGFQAKMLPGISAEDYMFADLGFDPSTYGCMTQEATELLVRNKKLDPSIH
NIIWQVGSVGVDTMVFDNGKFHLLVERLEKDFGLDHKIQHYIGAILPQSVTVKDTFAIRDLRKEEVLKQFTTTSTFYVPP
RTPAPIDPKAVQALGLPATVTKGAQDWTGFQSVSPAYGPDEMRAVAALDSFVPSQEKAVVHASRAMQSLMVDLALRPALL
EQYKADPVAFANTRNGLTAQEKFALGLKKPGPIFVVMRQLPSAIASGQEPSQEEIARADDATAFIIIYIVQ

The query sequence (length=391) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7twk:B 392 391 1.0000 0.9974 1.0000 0.0 7twk:A, 7twk:C, 7twk:D, 7twl:A, 7twl:B, 7twl:C, 7twl:D, 7twm:A, 7twm:B, 7twm:C, 7twm:D
2 6mjg:A 386 374 0.4246 0.4301 0.4439 9.95e-107 6mjf:A, 6mjf:B, 6mjf:C, 6mjf:D, 6mjf:F
3 5n0s:B 404 389 0.4271 0.4134 0.4293 1.02e-100 6gew:A, 5n0n:A, 5n0o:A, 5n0o:B, 5n0p:A, 5n0p:B, 5n0q:A, 5n0q:B, 5n0r:A, 5n0s:A, 5n0t:A, 5n0t:B, 5n0u:A, 5n0v:A, 5n0v:B, 5n0w:A, 5n0w:B, 5n0x:A, 5n0x:B, 5n4i:A, 5ouf:A, 6qzy:A, 6qzz:A, 6qzz:B, 6r00:A, 6tsc:A
4 7lte:A 262 245 0.2123 0.3168 0.3388 7.61e-40 7lte:C, 7ltr:A, 7ltr:H, 7lts:A, 7lts:C, 8t1s:A, 8t1s:C, 8t1t:A, 8t1t:C
5 2e0n:B 238 128 0.0997 0.1639 0.3047 0.013 2e0n:A
6 1cbf:A 239 121 0.0767 0.1255 0.2479 0.056 2cbf:A
7 2ybo:A 248 191 0.1176 0.1855 0.2408 0.26 2ybq:A
8 1pjq:B 455 124 0.0665 0.0571 0.2097 1.0 6p5x:A, 6p5x:B, 6p5z:A, 6p5z:B, 6p7c:A, 6p7c:B, 6p7d:A, 6p7d:B, 1pjs:A, 1pjs:B, 1pjt:A, 1pjt:B, 6pqz:A, 6pqz:B, 6pr0:A, 6pr0:B, 6pr1:A, 6pr1:B, 6pr2:A, 6pr2:B, 6pr3:A, 6pr3:B, 6pr4:A, 6pr4:B, 6ulu:A, 6ulu:B, 6veb:A, 6veb:B
9 4nas:B 399 69 0.0588 0.0576 0.3333 1.3 4nas:A, 4nas:C, 4nas:D
10 2ebf:X 711 106 0.0691 0.0380 0.2547 2.2 2ebh:X
11 6ynx:g 256 105 0.0614 0.0938 0.2286 5.2 6ynx:G, 6yny:g, 6yny:G, 6ynz:g, 6ynz:G, 6ynz:g3, 6ynz:G3
12 3opy:B 884 52 0.0435 0.0192 0.3269 5.5 3opy:D, 3opy:F, 3opy:H
13 1s4d:E 265 125 0.0767 0.1132 0.2400 6.2 1s4d:A, 1s4d:B, 1s4d:D, 1s4d:F, 1s4d:G, 1s4d:H, 1s4d:I, 1s4d:J, 1s4d:K, 1s4d:L, 1s4d:M
14 6u1x:A 2059 76 0.0563 0.0107 0.2895 6.4
15 5a22:A 2002 76 0.0563 0.0110 0.2895 6.4
16 5vkw:B 469 57 0.0435 0.0362 0.2982 7.6
17 4hz7:A 441 65 0.0563 0.0499 0.3385 9.4 4hz8:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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