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BioLiP
>protein
PGQKECDNALRQLETVRELLENPVQPINDMSYFGCLDSVMENSKVLGEAMTGISQNAKNGNLPEFGDAIATASKALCGFT
EAAAQAAYLVGVSDPNSQAQISPEGRAAMEPIVISAKTMLESAGGLIQTARALAVNPRDPPRWSVLAGHSRTVSDSIKKL
ITSMR

The query sequence (length=165) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8ivz:A 165 164 0.9939 0.9939 1.0000 5.53e-121 8ivz:B
2 6twn:B 309 98 0.5939 0.3172 1.0000 3.28e-67 5fzt:A, 6twn:A, 7v1a:A, 4w8p:A, 7zw4:A
3 6twn:B 309 67 0.4061 0.2168 1.0000 8.45e-41 5fzt:A, 6twn:A, 7v1a:A, 4w8p:A, 7zw4:A
4 7cyx:A 363 133 0.2242 0.1019 0.2782 0.39 7cyx:B
5 2p97:A 201 36 0.0848 0.0697 0.3889 3.0 2p97:B
6 2y42:D 355 107 0.1939 0.0901 0.2991 5.1 4f7i:A, 4f7i:B, 4f7i:C, 4f7i:D, 1hex:A, 4wuo:A, 4wuo:B, 2y40:A, 2y40:B, 2y41:A, 2y41:B, 2y42:A, 2y42:B, 2y42:C, 2ztw:A
7 5huq:A 433 91 0.1333 0.0508 0.2418 5.6 6c1w:A, 6c1w:B, 6c1w:C, 8ezf:B, 8ezh:B, 8ezi:B, 5huq:B
8 8bot:A 3528 80 0.1152 0.0054 0.2375 7.6
9 7nfe:A 3585 80 0.1152 0.0053 0.2375 7.8
10 7pmo:G 849 50 0.0970 0.0188 0.3200 8.1 7pmo:D, 7q1w:A, 7q20:A, 7q20:G
11 7k1k:A 3604 80 0.1152 0.0053 0.2375 8.1 7k1b:A
12 7z87:A 3689 80 0.1152 0.0052 0.2375 8.1
13 6zha:A 3707 80 0.1152 0.0051 0.2375 8.1 6zh8:A
14 8eza:L 3720 80 0.1152 0.0051 0.2375 8.1 8eza:C, 7lt3:C, 7lt3:L
15 7k1n:A 3634 80 0.1152 0.0052 0.2375 8.2 7z88:A
16 6zhe:A 3768 80 0.1152 0.0050 0.2375 8.2
17 7k1j:A 3584 80 0.1152 0.0053 0.2375 8.3 7k19:A
18 7su3:A 3802 80 0.1152 0.0050 0.2375 8.3
19 8ez9:L 3662 80 0.1152 0.0052 0.2375 8.4 8ez9:C
20 7sud:A 3740 80 0.1152 0.0051 0.2375 8.4
21 5y3r:C 3636 80 0.1152 0.0052 0.2375 8.4
22 6zhe:F 3731 80 0.1152 0.0051 0.2375 8.4
23 8ezb:C 3724 80 0.1152 0.0051 0.2375 8.5 8ezb:L
24 7k0y:A 3669 80 0.1152 0.0052 0.2375 8.6
25 7sgl:A 3852 80 0.1152 0.0049 0.2375 9.1

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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