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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
PGQALDAVRMRLAQLTHSLRRIRDEMSKAELPQWYTLQSQLNVTLSQLVSVTSTLQHFQETLDSTVVYPLPKFPTTSHES
LVTTLLRKKNIPEVDEWMKYVRETSGVTTALLKDEEIEKLLQQDREITNWARTTFRNEYGKHDPFNVDDVLKFTFTGEK

The query sequence (length=159) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 3j1o:J 159 159 1.0000 1.0000 1.0000 8.14e-117 3rj1:J, 3rj1:Q, 7ui9:h, 7uif:h, 7uig:h, 7uio:Ah, 7uio:Bh
2 5iji:A 227 55 0.1132 0.0793 0.3273 0.15 5jef:A, 5jef:B, 5jgp:A
3 5fjm:A 447 67 0.1258 0.0447 0.2985 0.19 5fjm:B, 5fjn:A, 5fjn:B
4 7ns4:i 358 163 0.2201 0.0978 0.2147 0.96
5 4g6u:A 213 60 0.1006 0.0751 0.2667 1.7
6 7ajt:UR 482 58 0.0943 0.0311 0.2586 3.3 7aju:UR, 7d4i:B8, 7d5s:B8, 7d5t:B8, 7d63:B8, 6ke6:B8, 6lqp:B8, 6lqq:B8, 6lqr:B8, 6lqs:B8, 6lqt:B8, 6lqu:B8, 6lqv:B8, 6nd4:S, 7suk:LS, 5wlc:LS, 6zqa:UR, 6zqb:UR, 6zqc:UR, 6zqd:UR
7 3w9z:A 290 88 0.1006 0.0552 0.1818 4.4
8 5ccv:A 849 75 0.1509 0.0283 0.3200 4.6 6h80:A, 6h9r:A, 6izz:A
9 3dnf:B 282 65 0.1195 0.0674 0.2923 5.0 3dnf:A
10 5d4w:A 688 34 0.0943 0.0218 0.4412 5.2 5d4w:B, 5d4w:C, 5zui:A
11 7bzc:A 535 92 0.1384 0.0411 0.2391 5.2 7bzb:A
12 5zcr:A 725 87 0.1384 0.0303 0.2529 6.3 5zcr:B
13 6zu5:SBB 80 33 0.0881 0.1750 0.4242 7.2
14 7d6v:A 601 58 0.1132 0.0300 0.3103 7.6 7d6x:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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