Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
PGLVTPLGTLLRPLNSEAGKVLPGWGTTVLMAVFILLFAAFLLIILEIYNSSLILDDVSMSWET

The query sequence (length=64) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8kde:H 73 64 1.0000 0.8767 1.0000 5.05e-40 6kac:H, 6kac:h, 6kad:H, 6kad:h, 6kaf:H, 6kaf:h, 8r2i:H, 8zee:H
2 7pi0:H 67 64 0.8906 0.8507 0.8906 1.80e-34 7pi0:h, 7pi5:H, 7pi5:h, 7pin:H, 7pin:h, 7pin:H1, 7pin:h1, 7piw:H, 7piw:h, 7piw:H1, 7piw:h1, 7pnk:H, 7pnk:h
3 8bd3:H 67 63 0.7500 0.7164 0.7619 8.56e-31 8bd3:h
4 8wql:HD 64 60 0.6562 0.6562 0.7000 1.55e-22 8wql:HE, 8wql:H1, 8wql:h1, 8wql:hD, 8wql:hE
5 5xnl:H 60 56 0.6094 0.6500 0.6964 1.84e-21 5xnl:h, 5xnm:H, 5xnm:h, 6yp7:h, 6yp7:H
6 8c29:H 62 59 0.5938 0.6129 0.6441 1.54e-20 8c29:h
7 7oui:H 60 57 0.5938 0.6333 0.6667 1.60e-20 3jcu:H, 3jcu:h, 5mdx:H, 5mdx:h, 7oui:h
8 6j3y:H 66 60 0.5625 0.5455 0.6000 2.08e-20 6j3y:h, 6j3z:H, 6j3z:h, 6j40:H, 6j40:h, 8j5k:H, 8j5k:h, 6jlu:H, 6jlu:h, 7vd5:H, 7vd5:h
9 6dhe:H 65 59 0.6875 0.6769 0.7458 2.48e-18 3a0b:H, 3a0b:h, 3a0h:H, 3a0h:h, 2axt:H, 2axt:h, 5b5e:H, 5b5e:h, 5b66:H, 5b66:h, 7cji:H, 7cji:h, 7cjj:H, 7cjj:h, 7cou:H, 7cou:h, 7czl:H, 7czl:h, 7d1t:H, 7d1t:h, 7d1u:H, 7d1u:h, 6dhe:h, 6dhf:H, 6dhf:h, 6dhg:H, 6dhg:h, 6dhh:H, 6dhh:h, 6dho:H, 6dho:h, 6dhp:H, 6dhp:h, 7dxa:h, 7dxh:h, 5e79:H, 5e79:h, 5e7c:H, 5e7c:h, 7eda:H, 9evx:H, 9evx:h, 8ez5:H, 8ez5:h, 8f4c:H, 8f4c:h, 8f4d:H, 8f4d:h, 8f4e:H, 8f4e:h, 8f4f:H, 8f4f:h, 8f4g:H, 8f4g:h, 8f4h:H, 8f4h:h, 8f4i:H, 8f4i:h, 8f4j:H, 8f4j:h, 8f4k:H, 8f4k:h, 4fby:H, 4fby:W, 8gn0:H, 8gn0:h, 8gn1:H, 8gn1:h, 8gn2:H, 8gn2:h, 5gth:H, 5gth:h, 5gti:H, 5gti:h, 5h2f:H, 5h2f:h, 4il6:H, 4il6:h, 8ir5:H, 8ir5:h, 8ir6:H, 8ir6:h, 8ir7:H, 8ir7:h, 8ir8:H, 8ir8:h, 8ir9:H, 8ir9:h, 8ira:H, 8ira:h, 8irb:H, 8irb:h, 8irc:H, 8irc:h, 8ird:H, 8ird:h, 8ire:H, 8ire:h, 8irf:H, 8irf:h, 8irg:H, 8irg:h, 8irh:H, 8irh:h, 8iri:H, 8iri:h, 4ixq:H, 4ixq:h, 4ixr:H, 4ixr:h, 6jlj:H, 6jlj:h, 6jlk:H, 6jlk:h, 6jll:H, 6jll:h, 6jlm:H, 6jlm:h, 6jln:H, 6jln:h, 6jlo:H, 6jlo:h, 6jlp:H, 6jlp:h, 5kaf:H, 5kaf:h, 5kai:H, 5kai:h, 3kzi:H, 5mx2:H, 5mx2:h, 7nho:H, 7nhp:H, 7nhq:H, 4pbu:H, 4pbu:h, 4pj0:H, 4pj0:h, 7rf1:H, 7rf1:h, 7rf2:H, 7rf2:h, 7rf3:H, 7rf3:h, 7rf4:H, 7rf4:h, 7rf5:H, 7rf5:h, 7rf6:H, 7rf6:h, 7rf7:H, 7rf7:h, 7rf8:H, 7rf8:h, 4rvy:H, 4rvy:h, 1s5l:H, 1s5l:h, 5tis:H, 5tis:h, 4tnh:H, 4tnh:h, 4tni:H, 4tni:h, 4tnj:H, 4tnj:h, 4tnk:H, 4tnk:h, 4ub6:H, 4ub6:h, 4ub8:H, 4ub8:h, 5v2c:H, 5v2c:h, 4v62:AH, 4v62:BH, 4v82:AH, 4v82:BH, 6w1o:H, 6w1o:h, 6w1p:H, 6w1p:h, 6w1q:H, 6w1q:h, 6w1r:H, 6w1r:h, 6w1t:H, 6w1t:h, 6w1u:H, 6w1u:h, 6w1v:H, 6w1v:h, 5ws5:H, 5ws5:h, 5ws6:H, 5ws6:h, 3wu2:H, 3wu2:h, 7yq2:H, 7yq2:h, 7yq7:H, 7yq7:h, 5zzn:H, 5zzn:h
10 4yuu:h1 62 60 0.6094 0.6290 0.6500 4.30e-17 4yuu:H1, 4yuu:H2, 4yuu:h2
11 7y5e:HL 66 62 0.6406 0.6212 0.6613 4.44e-17 8wb4:H, 8wb4:h, 8xlp:h, 8xlp:H, 8xr6:H, 8xr6:h, 7y5e:H6, 7y5e:h6, 7y5e:hL, 7y7a:H9, 7y7a:h9, 7y7a:hE, 7y7a:HE, 7y7a:HO, 7y7a:hO, 7y7a:HZ, 7y7a:hZ, 7y7a:Hm, 7y7a:hm
12 7n8o:H 63 58 0.6250 0.6349 0.6897 9.18e-17 7n8o:h, 7rcv:H, 7rcv:h, 8tow:H, 8tow:h, 6wj6:H
13 8iwh:H 65 60 0.5781 0.5692 0.6167 3.52e-15 8iwh:h
14 8eqm:H 65 56 0.4062 0.4000 0.4643 4.76e-13 8eqm:h
15 7ymi:H 68 50 0.3906 0.3676 0.5000 9.36e-11 7ymi:h, 7ymm:1H, 7ymm:2H, 7ymm:3H, 7ymm:4H
16 4oll:A 316 35 0.2344 0.0475 0.4286 0.12 4onu:A
17 2ycb:B 635 43 0.2500 0.0252 0.3721 1.5 2ycb:A
18 6uz8:A 734 43 0.2031 0.0177 0.3023 1.6 6uz8:D, 6uz8:C, 6uz8:B, 6uza:A, 6uza:B, 6uza:C, 6uza:D
19 2vf7:B 813 25 0.2188 0.0172 0.5600 1.6 2vf8:A
20 2vf8:B 835 25 0.2188 0.0168 0.5600 1.7 2vf7:A, 2vf7:C
21 7dxg:A 698 43 0.2031 0.0186 0.3023 1.8 7dxf:A, 7dxf:D, 7dxf:B, 7dxf:C, 7dxg:D, 7dxg:C, 7dxg:B
22 3vt3:A 250 45 0.2031 0.0520 0.2889 2.7 7c7w:A, 7vqp:A, 3vt7:A
23 6xr0:M 683 24 0.1719 0.0161 0.4583 5.5
24 4pxz:A 392 31 0.1562 0.0255 0.3226 8.0 4py0:A

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218