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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
PGLIIFVHGVNSEGEWYDYAERSLCAGLNQRLGLEGEHGLKENNYEGGFFVKKWVSGPRKITKGGDGRSPVIRFYWGYRA
ADNETDTYAIPLKNKKGDNYYDLPPESRKAKGPWFWGGGPFQNGCNQLVSLWSKTGFNNVPLPFSTQVLNDRLLSDAPPR
HYYAHAAGRLAKLIKTIRNQHPEDTVTVLSHSQGTMIALAAAAIEAPDALFVMNSPYALENEPTTYISYPIKEIISRKAR
SATFADIVKKVAENKTWIPEGKTHNGLPERDNHGTTWIYCNPHDRVMGSSPLRSIGWQGLPDTKDGTPHTLFKQAGDTLY
VRILGRNTPCGGTPTAQTHFSNLGDGKPFWDSTTTLLQRATWPDPDSGQTLTINAPQVPEPLTAEELKNFDQDYARDEKQ
SGGAGYAYGQINPETKKPVDTDYRYYISEEMLEEVRTYVQRPTDHSTLPSDERFMSRVVAYDLPIGSWDKAGLEELRRQA
DWLESDDYYFSGKLTVPPIPPAIKQDVAEDAEQRKAEEKAR

The query sequence (length=521) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8boz:A 541 531 1.0000 0.9630 0.9812 0.0 8boz:C, 8boz:M, 8boz:O
2 8boz:G 558 551 0.9981 0.9319 0.9437 0.0 8boz:E, 8boz:I, 8boz:K
3 5a9g:A 206 43 0.0307 0.0777 0.3721 1.5 5a9g:B, 6gsb:A, 6gsb:B, 6gsc:A, 6gsc:B
4 4v1n:M 299 49 0.0288 0.0502 0.3061 1.8 4bbr:M, 4bbs:M, 4v1o:M
5 4yz0:A 198 53 0.0326 0.0859 0.3208 2.8 4ew9:A, 4ew9:B, 3t9g:A, 3t9g:B, 4yz0:B, 4yza:A, 4yza:B, 4yzq:A, 4yzq:B, 4yzx:A, 4yzx:B, 4z03:A, 4z03:B, 4z05:A, 4z05:B, 4z06:A, 4z06:B
6 3lfz:A 280 143 0.0672 0.1250 0.2448 2.9 3kh5:A
7 4rzm:B 283 38 0.0250 0.0459 0.3421 5.2 3rga:A, 4rzm:A
8 4ney:B 173 52 0.0269 0.0809 0.2692 5.8 4ney:A, 4nez:A
9 4ney:B 173 52 0.0269 0.0809 0.2692 5.8 4ney:A, 4nez:A
10 1po0:A 661 39 0.0269 0.0212 0.3590 7.0 1po3:A, 1po3:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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