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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
PGLAELRRRVQEAGVPQTPQPLTDAFLLRFLRARDFDLDLAWRLMKNYYKWRAECPELSADLRPRSILGLLKAGYHGVLR
SRDSTGSRVLIYRIAYWDPKVFTAYDVFRVSLITSELIVQEVETQRNGVKAIFDLEGWQVSHAFQITPSVAKKIAAVLTD
SFPLKVRGIHLINEPVIFHAVFSMIKPFLTEKIKDRIHLHGNNYKSSMLQHFPDILPREYGGKEFSMEDICQEWTNFIMK
SEDYLSSISE

The query sequence (length=250) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 3w68:C 252 250 1.0000 0.9921 1.0000 0.0
2 1oiz:A 265 248 0.9040 0.8528 0.9113 1.18e-165 5mue:A, 5mug:A, 1oip:A, 1oiz:B, 1r5l:A, 3w67:A, 3w67:B, 3w67:C, 3w67:D, 3w68:A, 3w68:B, 3w68:D, 6zpd:A
3 4ciz:A 284 209 0.2680 0.2359 0.3206 7.44e-39 4cj6:A, 3hx3:A, 3hy5:A
4 1olm:E 397 235 0.2800 0.1763 0.2979 1.24e-21 1olm:A, 1olm:C, 4omj:A, 4omj:B, 4omk:A, 4omk:B
5 4tlg:A 396 239 0.2720 0.1717 0.2845 8.71e-21 4tlg:B
6 6f0e:A 300 245 0.2640 0.2200 0.2694 1.55e-16 7zg9:A, 7zg9:B, 7zga:A, 7zgb:A, 7zgc:A, 7zgd:A
7 3b7n:A 307 229 0.2320 0.1889 0.2533 3.41e-12 3b7z:A, 6sld:A
8 7y10:A 291 221 0.2240 0.1924 0.2534 2.41e-09 7y10:B, 7y11:A, 7y11:B
9 6w32:B 288 211 0.1600 0.1389 0.1896 0.003 6w32:A, 6w32:C
10 7wvt:A 364 215 0.1760 0.1209 0.2047 0.22 7wwd:A, 7wwg:A
11 7pkt:r 158 38 0.0600 0.0949 0.3947 6.2
12 1xhf:B 122 27 0.0480 0.0984 0.4444 9.3 1xhf:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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