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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
PGFVGIRFCQECNNMLYPKEDKENRILLYACRNCDYQQEADNSCIYVNKITHEVDELTQIIADVSQDPTLPRTEDHPCQK
CGHKEAVFFQSHSARAEDAMRLYYVCTAPHCGHRWTE

The query sequence (length=117) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5iy6:I 125 117 1.0000 0.9360 1.0000 1.70e-87 8a3y:I, 8a40:I, 7b0y:I, 8b3d:I, 8b3f:I, 7b7u:I, 8bvw:I, 8byq:I, 8bz1:I, 6drd:I, 7edx:w, 7eg7:w, 7eg8:w, 7eg9:w, 7ega:w, 7egb:w, 7egc:w, 7ena:PI, 7enc:PI, 6exv:I, 7f4g:I, 5flm:I, 6gmh:I, 6gml:I, 8gxq:PI, 8gxs:PI, 5iy7:I, 5iy8:I, 5iy9:I, 5iya:I, 5iyb:I, 5iyc:I, 5iyd:I, 7lbm:I, 7nvr:I, 7nvs:I, 7nvt:I, 7nvu:I, 7nvy:I, 7nvz:I, 7nw0:I, 8oeu:I, 8oev:I, 8oew:I, 8of0:I, 5oik:I, 7okx:I, 7oky:I, 7ol0:I, 7oo3:I, 7oob:I, 7oop:I, 7opc:I, 7opd:I, 7ozn:I, 7ozn:U, 7ozo:I, 7ozo:U, 7ozp:I, 7ozp:U, 8p4a:I, 8p4b:I, 8p4e:I, 8p4f:I, 7pks:I, 8rbx:I, 8s51:I, 8s52:I, 8s54:I, 8s55:I, 8s5n:I, 6ted:I, 8uha:I, 8uhd:I, 8uhg:I, 8ui0:I, 8uis:I, 7unc:I, 7und:I, 8w8e:I, 8w8f:I, 8wak:w, 8wal:w, 8wan:w, 8wao:w, 8wap:w, 8waq:w, 8war:w, 8was:w, 8wat:w, 8wau:w, 8wav:w, 8waw:w, 8wax:w, 8way:w, 8waz:w, 8wb0:w, 6xre:I, 7ycx:7, 7zwd:I, 7zx7:I, 7zx8:I
2 7eu0:I 113 112 0.6068 0.6283 0.6339 7.51e-52 7eu1:I, 8xmb:I, 8xmc:I, 8xmd:I, 8xme:I
3 8hil:I 99 112 0.5128 0.6061 0.5357 4.59e-39 8him:I, 8hyj:I
4 5x4z:I 113 103 0.4530 0.4690 0.5146 1.82e-32 6a5l:I, 6a5o:I, 6a5p:I, 6a5r:I, 6a5t:I, 6a5u:I, 8h0v:I, 8h0w:I, 8he5:I, 6inq:I, 6ir9:I, 6j4w:I, 6j4x:I, 6j4y:I, 6j4z:I, 6j50:I, 6j51:I, 8jh2:I, 8jh3:I, 8jh4:I, 7wbv:I, 7wbw:I, 7wbx:I, 5x4z:U, 5x50:I, 5x51:I, 5x51:U, 7xn7:I, 5xog:I, 5xon:I, 7xse:I, 7xsx:I, 7xsz:I, 7xt7:I, 7xtd:I, 7xti:I, 8yfq:I, 8yfr:I
5 1i3q:I 122 111 0.4274 0.4098 0.4505 4.54e-32 4a3b:I, 4a3c:I, 4a3d:I, 4a3e:I, 4a3f:I, 4a3g:I, 4a3i:I, 4a3j:I, 4a3k:I, 4a3l:I, 4a3m:I, 4a93:I, 2b8k:I, 4bbr:I, 4bbs:I, 6blo:I, 6blp:I, 6bm2:I, 6bm4:I, 6bqf:I, 4bxx:I, 4bxz:I, 4by1:I, 4by7:I, 5c3e:I, 5c4a:I, 5c4j:I, 5c4x:I, 8cen:I, 8ceo:I, 3cqz:I, 2e2h:I, 2e2i:I, 2e2j:I, 3fki:I, 5fmf:I, 5fyw:I, 5fz5:I, 3gtg:I, 3gtj:I, 3gtk:I, 3gtl:I, 3gtm:I, 3gto:I, 3gtp:I, 3gtq:I, 6gyk:I, 6gyl:I, 6gym:I, 3h3v:J, 3hou:I, 3hou:U, 3hov:I, 3how:I, 3hox:I, 3hoy:I, 3hoz:I, 3i4m:I, 3i4n:I, 1i50:I, 1i6h:I, 6i84:I, 5ip7:I, 5ip9:I, 3j0k:I, 2ja5:I, 2ja6:I, 2ja7:I, 2ja7:U, 2ja8:I, 8jch:I, 3k1f:I, 8k5p:I, 3k7a:I, 1k83:I, 7ked:I, 7kee:I, 7kef:I, 3m3y:I, 3m4o:I, 7mei:i, 7mei:I, 7mk9:I, 7mka:i, 7ml0:I, 7ml1:I, 7ml2:I, 7ml4:I, 1nik:I, 7nkx:I, 7nky:I, 2nvq:I, 2nvt:I, 2nvx:I, 2nvy:I, 2nvz:I, 7o4i:I, 7o4j:I, 6o6c:G, 7o72:I, 7o73:I, 7o75:I, 5oqj:I, 5oqm:I, 5ot2:I, 3po2:I, 3po3:I, 1r5u:I, 1r9s:I, 1r9t:I, 2r92:I, 7rim:I, 7rip:I, 7riq:I, 7riw:I, 7rix:I, 7riy:I, 3rzd:I, 3rzo:I, 3s14:I, 3s15:I, 3s16:I, 3s17:I, 3s1m:I, 3s1n:I, 3s1q:I, 3s1r:I, 3s2d:I, 3s2h:I, 1sfo:I, 5sva:I, 8tug:I, 8tvp:I, 8tvq:I, 8tvs:I, 8tvv:I, 8tvw:I, 8tvx:I, 8tvy:I, 1twa:I, 1twc:I, 1twf:I, 1twg:I, 1twh:I, 5u5q:I, 8u9r:I, 8u9x:I, 8ukq:I, 8ukr:I, 8uks:I, 8ukt:I, 8uku:I, 6upx:I, 6upy:I, 6upz:I, 6uq0:I, 6uq1:I, 6uq2:I, 6uq3:I, 4v1m:I, 4v1n:I, 4v1o:I, 2vum:I, 5vvr:I, 5vvs:I, 5w4u:I, 5w51:I, 1wcm:I, 4x67:I, 4x6a:I, 1y1v:I, 1y1w:I, 4y52:I, 1y77:I, 4y7n:I, 2yu9:I, 7zs9:I, 7zsa:I, 7zsb:I
6 3h0g:I 111 113 0.4615 0.4865 0.4779 1.40e-30 3h0g:U
7 7z0h:I 110 112 0.2821 0.3000 0.2946 1.68e-09 8bws:I, 6cnb:I, 6cnc:I, 6cnd:I, 6cnf:I, 6eu0:I, 6eu1:I, 6eu2:I, 6eu3:I, 6f40:I, 6f41:I, 6f42:I, 5fj8:I, 6tut:I, 7z1l:I, 7z1m:I, 7z1o:I, 7z2z:I, 7z30:I, 7z31:I
8 7d59:I 108 112 0.2479 0.2685 0.2589 4.14e-08 7a6h:I, 7ae1:I, 7ae3:I, 7aea:I, 7dn3:I, 7du2:I, 7fji:I, 7fjj:I, 8ity:I, 8iue:I, 8iuh:I
9 5fj9:I 92 112 0.2906 0.3696 0.3036 6.63e-08 5fja:I
10 1qyp:A 57 47 0.1368 0.2807 0.3404 0.010
11 5fmf:2 174 68 0.1453 0.0977 0.2500 0.056 3po3:S, 1y1v:S
12 5iy6:U 170 44 0.1197 0.0824 0.3182 0.12 5iy7:U, 5iy8:U, 5iya:U, 5iyb:U, 5iyc:U, 6o9l:U, 1tfi:A
13 5xon:U 155 43 0.1197 0.0903 0.3256 0.16
14 7oba:I 105 102 0.1624 0.1810 0.1863 0.43 7ob9:I, 7obb:I
15 8j12:A 424 35 0.1197 0.0330 0.4000 0.57 8dzj:A, 8dzj:B, 8j1j:A, 8j3r:A, 7wju:A, 7wju:B
16 4fha:A 307 35 0.0940 0.0358 0.3143 1.6 4fha:B
17 8bws:L 50 39 0.1026 0.2400 0.3077 2.2 4a3b:L, 4a3c:L, 4a3d:L, 4a3e:L, 4a3f:L, 4a3g:L, 4a3i:L, 4a3j:L, 4a3l:L, 4a3m:L, 4a93:L, 2b63:L, 2b8k:L, 4bbr:L, 4bbs:L, 6blo:L, 6blp:L, 6bm2:L, 6bm4:L, 6bqf:L, 4bxx:L, 4bxz:L, 4by7:L, 4c2m:1, 4c2m:L, 4c3h:L, 4c3i:L, 4c3j:L, 5c4j:L, 8cen:L, 8ceo:L, 6cnb:L, 6cnc:L, 6cnd:L, 6cnf:L, 3cqz:L, 2e2h:L, 2e2i:L, 2e2j:L, 6eu0:L, 6eu1:L, 6eu2:L, 6eu3:L, 6f41:L, 6f42:L, 6f44:L, 5fj8:L, 5fj9:L, 5fja:L, 5fmf:L, 5fyw:L, 5fz5:L, 5g5l:L, 3gtg:L, 3gtj:L, 3gtk:L, 3gtm:L, 3gtp:L, 3gtq:L, 3h3v:M, 6h67:L, 6h68:L, 6hko:L, 6hlq:L, 6hlr:L, 6hls:L, 3hou:L, 3hou:X, 3hov:L, 3how:L, 3hox:L, 3hoy:L, 3hoz:L, 1i3q:L, 3i4m:L, 3i4n:L, 1i50:L, 1i6h:L, 6i84:L, 5ip7:L, 5ip9:L, 3j0k:L, 2ja5:L, 2ja6:L, 2ja7:L, 2ja7:X, 2ja8:L, 9ja1:L, 8jch:L, 3k1f:L, 8k5p:L, 3k7a:L, 1k83:L, 7ked:L, 7kee:L, 7kef:L, 5lmx:L, 5m3f:L, 5m3m:L, 3m4o:L, 5m5w:L, 5m5x:L, 5m5y:L, 5m64:L, 7mei:L, 7mk9:L, 7ml0:L, 7ml1:L, 7ml2:L, 7ml4:L, 5n5y:L, 5n5z:L, 5n60:L, 5n61:L, 7nkx:L, 7nky:L, 2nvq:L, 2nvt:L, 2nvx:L, 2nvy:L, 2nvz:L, 7o4i:L, 7o4j:L, 6o6c:J, 7o72:L, 7o73:L, 7o75:L, 5oa1:L, 5ot2:L, 3po2:L, 3po3:L, 3qt1:L, 1r5u:L, 2r7z:L, 1r9s:L, 1r9t:L, 2r92:L, 2r93:L, 7rim:L, 7rip:L, 7riq:L, 7riw:L, 7rix:L, 7riy:L, 6rqt:L, 6ruo:L, 6rwe:L, 3rzd:L, 3rzo:L, 3s14:L, 3s15:L, 3s16:L, 3s17:L, 3s1m:L, 3s1n:L, 3s1q:L, 3s1r:L, 3s2d:L, 3s2h:L, 1sfo:L, 5sva:L, 6tps:L, 6tut:L, 8tug:L, 8tvp:L, 8tvq:L, 8tvs:L, 8tvv:L, 8tvw:L, 8tvx:L, 1twa:L, 1twc:L, 1twf:L, 1twg:L, 1twh:L, 5u5q:L, 8u9r:L, 8u9x:L, 8ukq:L, 8ukr:L, 8uks:L, 8ukt:L, 8uku:L, 6upx:L, 6upy:L, 6upz:L, 6uq0:L, 6uq1:L, 6uq2:L, 6uq3:L, 4v1m:L, 4v1n:L, 4v1o:L, 5vvr:L, 5vvs:L, 5w4u:L, 5w51:L, 5w5y:L, 5w64:L, 5w65:L, 5w66:L, 1wcm:L, 4x67:L, 4x6a:L, 1y1v:L, 1y1w:L, 4y52:L, 1y77:L, 4y7n:L, 4ym7:AL, 4ym7:BL, 4ym7:CL, 4ym7:DL, 4ym7:EL, 4ym7:FL, 2yu9:L, 7z0h:L, 7z1l:L, 7z1m:L, 7z1n:L, 7z1o:L, 7z2z:L, 7z30:L, 7z31:L, 7zs9:L, 7zsa:L, 7zsb:L
18 6bvv:A 416 46 0.1368 0.0385 0.3478 4.5 6bw9:A, 6bwa:A, 6bwb:A, 8fub:A, 8fzm:A, 8fzm:C, 8hkw:A, 8hkw:B, 7jjl:A, 7lf4:A, 7lf4:C, 7lfc:A, 7rfy:A, 7rg5:A, 5xzx:A
19 4c2m:I 124 43 0.0940 0.0887 0.2558 4.8 4c2m:X, 4c3h:I, 4c3i:I, 4c3j:I, 6h67:I, 6h68:I, 6hko:I, 6hlr:I, 5lmx:I, 5m3f:I, 5m3m:I, 5m5x:I, 5n61:I, 5oa1:I, 6rqt:I, 6ruo:I, 6rwe:I, 6tps:I, 5w5y:I, 5w64:I, 5w65:I, 5w66:I, 4ym7:AI, 4ym7:BI, 4ym7:CI, 4ym7:DI, 4ym7:EI, 4ym7:FI
20 6hlq:I 111 38 0.0855 0.0901 0.2632 5.7 5g5l:I, 6hls:I
21 8rte:A 350 87 0.2137 0.0714 0.2874 7.8 8rte:B
22 7c7l:B 372 33 0.0769 0.0242 0.2727 8.6
23 6zr5:D 38 13 0.0684 0.2105 0.6154 9.9 6zr5:C

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218