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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
PFSVKVGLAQMLRGGVIMDVVNAEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQMIKEIKQAVTIPVMAKARIG
HFVEAQILEAIGIDYIDESEVLTLADEDHHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVR
SVNGDIRVLRNMDDDEVFTFAKKLAAPYDLVMQTKQLGRLPVVQFAAGGVATPADAALMMQLGCDGVFVGSGIFPARRAR
AIVQAVTHYSDPEMLVEVSCGL

The query sequence (length=262) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5k2z:B 278 266 1.0000 0.9424 0.9850 0.0 5k2z:A, 5k2z:C, 5k2z:D, 5lnr:A, 5lnr:B, 5lnr:C, 5lnr:D, 5lns:A, 5lns:B, 5lns:C, 5lns:D, 5lnt:A, 5lnt:B, 5lnt:C, 5lnt:D, 5lnu:A, 5lnu:B, 5lnu:C, 5lnu:D, 5lnv:A, 5lnv:B, 5lnv:C, 5lnv:D, 5lnw:A, 5lnw:B, 5lnw:C, 5lnw:D, 7nhe:A, 7nhe:B, 7nhe:C, 7nhe:D
2 4jdy:A 264 260 0.6794 0.6742 0.6846 2.19e-126 4jdy:B, 4jdy:C
3 8u7j:L 267 256 0.6603 0.6479 0.6758 7.93e-123 8u7j:K, 8u7j:I, 8u9e:B
4 4ads:A 282 263 0.6336 0.5887 0.6312 1.15e-122 4ads:B, 4ads:C, 4ads:D, 4ads:E, 4ads:F, 4adt:A, 4adt:B, 4adu:A, 4adu:B
5 2iss:B 285 262 0.6450 0.5930 0.6450 1.73e-121 2iss:A, 2iss:C
6 4wy0:B 260 263 0.6641 0.6692 0.6616 1.79e-121 4wy0:D, 4wy0:E, 4wy0:G, 4wy0:I, 4wy0:J, 4wy0:K, 1znn:A, 1znn:B, 1znn:C, 1znn:D, 1znn:E, 1znn:F
7 3o05:A 261 257 0.6183 0.6207 0.6304 4.56e-117 3o05:B, 3o05:C
8 4fir:A 333 297 0.6794 0.5345 0.5993 2.63e-115 4fir:B, 4fir:C, 4fir:D, 4fir:E, 4fir:F
9 5z9y:B 234 50 0.0802 0.0897 0.4200 0.016 5z9y:A
10 1tyg:A 242 64 0.0878 0.0950 0.3594 0.035 1tyg:C
11 3w9z:A 290 181 0.1908 0.1724 0.2762 0.60
12 4bf9:A 318 92 0.1145 0.0943 0.3261 1.0 4bfa:A, 4bfa:B, 4yco:A, 4yco:B, 4yco:C, 4ycp:A
13 3a59:A 141 39 0.0420 0.0780 0.2821 2.6 3a59:C, 3a59:E, 3a59:G, 3fs4:A, 3fs4:C
14 8qpl:A 331 61 0.0649 0.0514 0.2787 3.2 8qpl:B
15 7qep:S0 203 73 0.0840 0.1084 0.3014 4.3
16 4jej:A 241 36 0.0611 0.0664 0.4444 4.8
17 4z38:B 439 43 0.0611 0.0364 0.3721 4.9 4z38:A
18 5yij:A 959 78 0.0687 0.0188 0.2308 5.4 5ysi:A
19 1ox4:B 538 61 0.0687 0.0335 0.2951 5.9 1jvn:B, 1ox4:A, 1ox5:A, 1ox5:B, 1ox6:B
20 1a4f:A 141 39 0.0382 0.0709 0.2564 7.9 1c40:A, 3eok:A, 1faw:A, 1faw:C, 1hv4:A, 1hv4:C, 1hv4:E, 1hv4:G
21 3qh2:B 196 47 0.0725 0.0969 0.4043 8.2 3qh2:A, 3qh2:C, 3qh2:D
22 4cw7:A 181 26 0.0496 0.0718 0.5000 8.4 4cvn:A, 4cvn:B, 4cvn:C, 4cvn:D, 4cw7:C, 4cw7:E, 4cw7:G
23 8gju:J 689 58 0.0725 0.0276 0.3276 9.0 8gju:K, 8gju:L, 8gju:H
24 2ccy:A 127 37 0.0611 0.1260 0.4324 9.6 2ccy:B
25 7o0y:A 402 38 0.0534 0.0348 0.3684 9.7 7o10:A, 7o11:A, 7o12:A, 7o13:A, 7o14:A, 7o15:A, 7o16:A, 7osf:A, 7osg:A, 7osh:A, 7osi:A, 7osj:A, 7znq:D
26 4n6f:A 242 69 0.1069 0.1157 0.4058 9.9 4n6f:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218