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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
PFRFSPEPTLEDIRRLHAEFAAERDWEQFHQPRNLLLALVGEVGELAELFQWKSDTEPGPQAWPPKERAALQEELSDVLI
YLVALAARCHVDLPQAVISKMDTNRQRYPV

The query sequence (length=110) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6sqw:A 114 110 1.0000 0.9649 1.0000 4.12e-78 2oig:B, 2oig:A, 2oig:D, 6sqw:D, 6sqy:A, 6sqy:D, 6sqz:A, 6sqz:D
2 7mu5:A 110 108 0.8818 0.8818 0.8981 2.62e-68 7mu5:E, 7mu5:B, 7mu5:H, 7mu5:C, 7mu5:D, 7mu5:F, 7mu5:G
3 4qgp:A 108 100 0.3000 0.3056 0.3300 1.16e-15 4qgp:B
4 2q5z:B 94 80 0.2273 0.2660 0.3125 7.52e-04 2q5z:A, 2q73:A, 2q73:B, 2q73:C, 2q73:D, 2q9l:A, 2q9l:B, 2q9l:C, 2q9l:D
5 5ie9:C 95 80 0.2091 0.2421 0.2875 0.014 5ie9:A, 5ie9:B, 5ie9:D
6 4gc9:A 318 79 0.1818 0.0629 0.2532 0.15 7pnt:c
7 7ody:C 100 34 0.1273 0.1400 0.4118 0.29 7ody:A, 7ody:B, 7ody:D
8 8hku:L18P 193 52 0.1364 0.0777 0.2885 0.45 8hkv:L18P, 8hky:L18P, 8hkz:L18P, 8hl1:L18P, 8hl2:L18P, 8hl3:L18P, 8hl4:L18P, 8hl5:L18P
9 9f2k:A 513 22 0.1000 0.0214 0.5000 1.5
10 4dl8:A 224 33 0.0909 0.0446 0.3030 7.2 4dk4:A, 4dk4:B, 4dkb:A, 4dlc:A
11 4ry8:B 321 19 0.0909 0.0312 0.5263 7.4 4ry8:A, 4ry8:C, 4ry8:D
12 4k0x:A 243 68 0.1727 0.0782 0.2794 8.1 4jf4:A, 4jf4:B, 4k0w:A, 6n6u:A, 6n6v:A, 6n6x:A, 6n6y:A, 7t7d:A, 7t7e:A, 7t7f:A, 7t7g:A, 5wi3:B, 5wi3:A, 5wi7:A, 5wi7:B, 5wib:A, 5wib:B, 4x55:A, 4x55:B
13 3frh:A 241 32 0.1091 0.0498 0.3750 9.1 3b89:A, 3fri:A
14 5euf:B 416 35 0.1000 0.0264 0.3143 9.2 5euf:A
15 6h57:A 795 71 0.1909 0.0264 0.2958 9.6
16 7aju:JD 811 71 0.1909 0.0259 0.2958 9.7 6zqd:JD, 6zqe:JD, 6zqf:JD
17 7d63:RZ 839 71 0.1909 0.0250 0.2958 9.7 7d4i:RZ, 7d5t:RZ, 7mqj:A
18 6zqg:JD 829 71 0.1909 0.0253 0.2958 9.9

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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