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BioLiP
>protein
PFQNGFEEMIQWTKEGKLWEFPINNEAGFDDDGSEFHEHIFLDKYLQDFPKQGPIRHFMELVTCGLSKNPYLSVKQKVEH
IEWFRNYFNEKRVILKESGIQLN

The query sequence (length=103) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6gaw:Ah 120 103 1.0000 0.8583 1.0000 1.90e-74 6gaz:Ah, 7nql:Ah, 7nsi:Ah, 7nsj:Ah, 6ydp:Ah, 6ydw:Ah
2 8ois:AY 149 103 0.9029 0.6242 0.9029 2.74e-67 5aj4:Ah, 3jd5:h
3 3cb3:A 373 69 0.1748 0.0483 0.2609 0.87 3cb3:B, 3cb3:C, 3cb3:D, 2og9:A, 2og9:B
4 7nyx:E 212 38 0.1262 0.0613 0.3421 1.1 7nyw:F, 7nyx:F, 7nyz:E, 7nyz:F, 7nz0:E, 7nz0:F, 7nz2:F3, 7nz2:F4, 7nz2:E3, 7nz2:E4, 7nz2:E1, 7nz2:E2, 7nz2:F1, 7nz2:F2, 7nz3:E1, 7nz3:F1, 7nz3:E2, 7nz3:F2
5 7jm7:A 683 42 0.1359 0.0205 0.3333 1.8 7cq5:C, 7cq5:D, 7cq7:C, 7cq7:D, 7jm7:C
6 7jm6:A 667 42 0.1359 0.0210 0.3333 2.3 7jm6:B
7 3msu:B 426 50 0.1650 0.0399 0.3400 3.5 3msu:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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