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BioLiP
>protein
PFLDIQKKLGISLDRHFMFLSAEQPYKNAARCHAFEKEWIECAHGIGGTRAKKECKIEFDDFEECLLRYKTMRRMHDIKK
QREKLMKEGKYTPPPHHSGREEPRP

The query sequence (length=105) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8ibf:e 105 105 1.0000 1.0000 1.0000 7.55e-76 8iaq:e, 8ib6:e, 8ibb:e, 8ic4:e
2 7v2e:h 105 105 0.7333 0.7333 0.7333 3.49e-55 7v2h:h, 7v2r:h, 7v30:h, 7v33:h, 7vbl:h, 7vbp:h, 7vc0:h, 7vy9:h, 7vys:h, 7vz8:h, 7w00:h, 7w0r:h, 7w0y:h, 7w2k:h, 7w2r:h, 7w2u:h, 7w2y:h, 7w4c:h, 7w4e:h, 7w4f:h, 7w4j:h, 7w4k:h
3 5xtc:h 104 104 0.7333 0.7404 0.7404 3.00e-54 5xtd:h, 5xth:h, 5xti:h, 5xti:Bh
4 6kut:A 688 88 0.2190 0.0334 0.2614 0.47 6kuj:A, 6kuk:A, 6kup:A, 6kur:A, 6kuu:A, 6kuv:A
5 6x89:S5 66 60 0.1524 0.2424 0.2667 0.48
6 4j8f:A 551 63 0.1619 0.0309 0.2698 0.83 5aqw:A, 5aqx:A, 5aqy:A, 5aqz:A, 5ar0:A, 3atu:A, 3atv:A, 3ay9:A, 5bn8:A, 5bn9:A, 5bpl:A, 5bpm:A, 3d2f:B, 3d2f:D, 2e88:A, 2e8a:A, 7f4x:A, 7f4z:A, 7f50:A, 7fgm:A, 6fhk:A, 6fhk:B, 6g3r:A, 6g3s:A, 3gdq:A, 1hjo:A, 4io8:A, 3jxu:A, 7kw7:D, 5mkr:A, 5mks:A, 7q4r:A, 1s3x:A, 1xqs:C, 1xqs:D, 6zyi:A
7 3afl:A 766 32 0.0952 0.0131 0.3125 5.0
8 7jm6:A 667 53 0.1143 0.0180 0.2264 5.5 7jm6:B
9 8x5f:A 616 45 0.1429 0.0244 0.3333 6.7 8x5b:F, 8x5b:A, 8x5f:B
10 7ut1:b 244 45 0.1619 0.0697 0.3778 8.0 7usf:D, 7usf:C, 7ut1:g, 7ut1:h, 7ut1:H, 7ut1:f, 7ut1:B, 7ut1:F, 7ut1:G

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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