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BioLiP
>protein
PFEFRTSVVVSTLLGLVMALLIHFVVLSSGA

The query sequence (length=31) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8iug:3 39 31 1.0000 0.7949 1.0000 6.16e-15 8hju:9, 8hju:1, 8hju:3, 8hju:5, 8hju:7, 8hju:A, 8hju:D, 8hju:F, 8hju:H, 8hju:J, 8hju:N, 8hju:P, 8hju:R, 8hju:T, 8hju:V, 8hjv:9, 8hjv:1, 8hjv:3, 8hjv:5, 8hjv:7, 8hjv:A, 8hjv:D, 8hjv:F, 8hjv:H, 8hjv:J, 8hjv:N, 8hjv:P, 8hjv:R, 8hjv:T, 8hjv:V, 8iug:9, 8iug:1, 8iug:5, 8iug:7, 8iug:A, 8iug:D, 8iug:F, 8iug:H, 8iug:J, 8iug:R, 8iug:N, 8iug:P, 8iug:T, 8iug:V, 8iun:V, 8iun:T, 8iun:R, 8iun:P, 8iun:N, 8iun:J, 8iun:H, 8iun:F, 8iun:D, 8iun:A, 8iun:9, 8iun:7, 8iun:5, 8iun:1, 8iun:3, 8j5o:9, 8j5o:1, 8j5o:3, 8j5o:5, 8j5o:7, 8j5o:A, 8j5o:D, 8j5o:F, 8j5o:H, 8j5o:J, 8j5o:R, 8j5o:T, 8j5o:N, 8j5o:P, 8j5o:V, 8j5p:V, 8j5p:9, 8j5p:1, 8j5p:3, 8j5p:5, 8j5p:7, 8j5p:A, 8j5p:D, 8j5p:F, 8j5p:H, 8j5p:J, 8j5p:P, 8j5p:N, 8j5p:R, 8j5p:T, 5yq7:D, 5yq7:A, 5yq7:9, 5yq7:7, 5yq7:3, 5yq7:1, 5yq7:J, 5yq7:V, 5yq7:T, 5yq7:R, 5yq7:P, 5yq7:N, 5yq7:H, 5yq7:F, 5yq7:5
2 7oy8:8 48 28 0.3871 0.2500 0.4286 2.2 7eqd:A, 7eqd:D, 7eqd:9, 7eqd:F, 7eqd:I, 7eqd:K, 7eqd:O, 7eqd:Q, 7eqd:S, 7eqd:U, 7eqd:W, 7eqd:Y, 7eqd:1, 7eqd:3, 7eqd:5, 7eqd:7, 7oy8:Z, 7oy8:X, 7oy8:2, 7oy8:4, 7oy8:6, 7oy8:D, 7oy8:A, 7oy8:E, 7oy8:F, 7oy8:G, 7oy8:J, 7oy8:N, 7oy8:R, 7oy8:T, 7oy8:V
3 7xxf:S 58 28 0.3871 0.2069 0.4286 2.7 7xxf:9, 7xxf:D, 7xxf:A, 7xxf:F, 7xxf:I, 7xxf:K, 7xxf:O, 7xxf:Q, 7xxf:U, 7xxf:W, 7xxf:Y, 7xxf:1, 7xxf:3, 7xxf:5, 7xxf:7
4 7vrj:7 44 30 0.4194 0.2955 0.4333 3.2 7vrj:A, 7vrj:9, 7vrj:I, 7vrj:K, 7vrj:O, 7vrj:Q, 7vrj:1, 7vrj:5, 8wdu:7, 8wdu:9, 8wdu:O, 8wdu:A, 8wdu:I, 8wdu:K, 8wdu:Q, 8wdu:1, 8wdu:5, 8wdv:7, 8wdv:O, 8wdv:A, 8wdv:9, 8wdv:I, 8wdv:K, 8wdv:Q, 8wdv:1, 8wdv:5
5 6et5:1 55 27 0.3226 0.1818 0.3704 3.8 6et5:4, 6et5:G, 6et5:N, 6et5:Q, 6et5:T, 6et5:W, 6et5:Z, 6et5:c, 6et5:f, 6et5:i, 6et5:l, 6et5:o, 6et5:r, 6et5:u, 6et5:x, 6et5:7
6 4d1a:A 456 17 0.2903 0.0197 0.5294 4.6 4d1b:A, 4d1c:A, 4d1d:A
7 7o0u:ak 71 13 0.3226 0.1408 0.7692 6.6 7o0u:ah, 7o0u:ac, 7o0u:af, 7o0u:aa, 7o0u:ab, 7o0u:ad, 7o0u:ae, 7o0u:ag, 7o0u:ai, 7o0u:aj, 7o0u:al, 7o0u:am, 7o0u:an, 7o0u:ao, 7o0u:ap, 7o0v:af, 7o0v:ah, 7o0v:ac, 7o0v:ae, 7o0v:aa, 7o0v:ab, 7o0v:ad, 7o0v:ag, 7o0v:ai, 7o0v:aj, 7o0v:ak, 7o0v:al, 7o0v:am, 7o0v:an, 7o0v:ao, 7o0v:ap, 7o0w:ac, 7o0w:af, 7o0w:aa, 7o0w:ab, 7o0w:ad, 7o0w:ae, 7o0w:ag, 7o0w:ah, 7o0w:ai, 7o0w:aj, 7o0w:ak, 7o0w:al, 7o0w:am, 7o0w:an, 7o0w:ao, 7o0w:ap, 7o0x:ah, 7o0x:ac, 7o0x:af, 7o0x:aa, 7o0x:ab, 7o0x:ad, 7o0x:ae, 7o0x:ag, 7o0x:ai, 7o0x:aj, 7o0x:ak, 7o0x:al, 7o0x:am, 7o0x:ao, 7o0x:an, 7o0x:ap

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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