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BioLiP
>protein
PEWIQVFGLRTENVLDYFAESPFFDKTSNNQVIKMQRQFSQLNDPNEEEFAYVDPARRQILFKYPMYMQLEEELMKLDIF
KIVQSRLMSTSYHLNSTLESLYD

The query sequence (length=103) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3rj1:G 103 103 1.0000 1.0000 1.0000 1.49e-73 3rj1:N, 3rj1:U
2 4gwq:G 170 78 0.7282 0.4412 0.9615 1.41e-49 5sva:M, 7ui9:f, 7uif:f, 7uig:f, 7uio:Af, 7uio:Bf
3 4gwq:G 170 25 0.2427 0.1471 1.0000 9.50e-10 5sva:M, 7ui9:f, 7uif:f, 7uig:f, 7uio:Af, 7uio:Bf
4 8t9d:C 178 37 0.1942 0.1124 0.5405 2.85e-06 8t1l:C
5 4xx6:B 321 45 0.1456 0.0467 0.3333 1.1 4xx6:A
6 8fs6:G 298 41 0.1456 0.0503 0.3659 1.9
7 7pnb:A 183 63 0.1650 0.0929 0.2698 2.2 7pnb:C, 7pnb:E, 7pnb:D, 7pnb:F, 7pnb:G, 7pnb:H, 7pnb:I, 8rzl:C, 8rzl:E, 8rzl:A, 8rzl:B, 8rzl:D
8 7w16:A 264 84 0.1942 0.0758 0.2381 4.9
9 7w81:A 181 21 0.0971 0.0552 0.4762 6.0 3qug:A, 3qug:B, 3quh:A, 3quh:B, 3vtm:A, 3vtm:B, 7w81:B, 2z6f:A
10 1g6h:A 254 20 0.0971 0.0394 0.5000 9.2 1g9x:A, 1g9x:B, 1g9x:C

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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