Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
PEVSPVTGNPVSPHYIHSSTLHFQDVNGRSLVLRGVNLSGSAKHPNNQPSHIREGFWETAEAGKGDFINKPLNLDDGSAD
LHLARLKAWGYNLLRYVFTWESLEHAGPKEYDYAYMDYIIAVLRKCKEWGFRVFMDPHQDVWSRFTGGSGAPLWTLYACG
IDPYHLTATAAAYLHCEWPSAESPKPQDFPAMIWGTNYTHLANQTIWTFFFAGKTYAPKCIIDGKNIQDFLQDHFIDAVG
ELAKRIAEEAGDLLDECVIGWDSINEPGEGLIGCKDLAVIPAEQQLKKGPSPTPIEGMRLGMGEAQDVQAWNFGPMGPYR
GSRQTIDPKGVKLWLSKEDDVKRGSGKWGWTRGKEWALGTCIWAHHGVWEIATSTLLRPDYFSTLPTNPGHQVDFVDDFW
ALHWLAYSSRIRLHHPESIHFIQAPVLRQPPKLPESFLKGRACSSPHFYDGLTLMTKHWNWFNADAIGVIRKKYWSIVQA
VRIGEGPIRKMIQGELAVLKQDTIDILGNYPTLVGEIGIPYDMDDKKAYGYVDGGRGEGDYSSQQKAMDCSMNACDGPNC
LNYAIWNYVPDNVHEWGDNWNGEDLSLWSVDDKESPSVIDSGDFSPTLILDGSRAVAAFCRPYPVATVGIPERIDFDITS
TKFKYAVRVRADNEQVYTEIYLPFVHYAASLNALSLDVTIVASHGRVEIQGQTLRWWYPVPGTGEEVYTIEVQRNGGAL

The query sequence (length=719) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7lpp:A 732 730 1.0000 0.9822 0.9849 0.0 7lpp:B, 7lpp:C, 7lpp:D, 7lpq:A, 7lpq:B, 7lpq:C, 7lpq:D
2 2osx:A 449 124 0.0542 0.0869 0.3145 1.53e-07 2osy:A, 2osy:B, 2oyk:A, 2oyk:B, 2oyl:A, 2oyl:B, 2oym:A, 2oym:B
3 5j14:A 450 67 0.0292 0.0467 0.3134 0.006 5j14:B, 5j7z:A
4 5j14:A 450 49 0.0264 0.0422 0.3878 0.39 5j14:B, 5j7z:A
5 6ofc:B 669 44 0.0223 0.0239 0.3636 2.8 3dla:A, 3dla:D, 3dla:C, 6ofc:A, 6ofc:D, 6ofc:C, 3seq:A, 3seq:B, 3sez:A, 3sez:B, 3syt:A, 3syt:B, 3syt:C, 3szg:A, 3szg:D, 3szg:C
6 3seq:D 650 44 0.0223 0.0246 0.3636 2.8 3dla:B, 3seq:C, 3sez:D, 3sez:C, 3syt:D, 3szg:B
7 2qp2:A 498 47 0.0278 0.0402 0.4255 3.8
8 4e84:A 313 40 0.0181 0.0415 0.3250 5.8 4e84:B, 4e8w:A, 4e8w:B, 4e8y:A, 4e8y:B, 4e8z:A, 4e8z:B
9 6r2j:D 329 117 0.0334 0.0729 0.2051 6.0 6r2j:A
10 8hbh:B 577 72 0.0292 0.0364 0.2917 7.0 7d9r:B, 7d9s:B, 7d9t:B, 7d9u:B, 8hbe:B, 8hbf:B, 6jt0:B, 6jt1:B, 6jt2:B, 5mnw:A
11 7y74:I 173 28 0.0181 0.0751 0.4643 7.3 7vhr:A, 7vhr:B, 7vhr:C, 7vhr:D, 7vhr:E, 7vhr:F, 7vhr:G, 7vhr:H, 7vhr:I, 7vhr:J, 7vhr:K, 7vhr:L, 7vhr:M, 7vhr:N, 7vhr:O, 7vhr:P, 7vhr:Q, 7vhr:R, 7vhr:S, 7vhr:T, 7vhr:U, 7vhr:V, 7vhr:W, 7vhr:X, 7y74:A, 7y74:B, 7y74:C, 7y74:D, 7y74:E, 7y74:F, 7y74:G, 7y74:H, 7y74:J, 7y74:K, 7y74:L

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218