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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
PEVLRQQLWLAHNLREDLVSLQLAYDDDLKAIWSSYPDVAQAEDTMAQQLRDAKKRLKDARQARRDAIAVVKDDAAERRK
ARSDQLAADQKALYGQYCRDGDLYWASFNTVLDHHKTAVKRIAAQRASGKPATLRHHRFDGRCGSTDGQPQW

The query sequence (length=152) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8hio:D 152 152 1.0000 1.0000 1.0000 4.62e-109
2 8hio:A 567 167 0.9276 0.2487 0.8443 1.70e-88
3 8hhl:A 592 171 0.9211 0.2365 0.8187 3.09e-87 8hhm:A
4 8pm4:A 604 171 0.5526 0.1391 0.4912 4.31e-43
5 5fib:B 534 124 0.2039 0.0581 0.2500 2.3 5fi9:B, 5fi9:A, 5fib:A, 5fic:A, 5fic:C, 5fic:B, 5fic:D, 5hqn:B, 5hqn:A
6 2vr5:A 715 63 0.1184 0.0252 0.2857 2.9 2vr5:B
7 6j0x:B 466 33 0.0724 0.0236 0.3333 2.9 6j0w:A, 6j0w:B, 6j0x:A, 6j0x:C, 6j0x:D
8 4d7e:C 377 42 0.1118 0.0451 0.4048 4.5
9 7ajt:JP 461 80 0.1118 0.0369 0.2125 4.5 7aju:JP, 7d4i:5I, 7d5s:5I, 7d5t:5I, 7d63:5I, 6ke6:5I, 6lqp:5I, 6lqq:5I, 6lqr:5I, 6lqs:5I, 6lqt:5I, 6lqu:5I, 6lqv:5I, 7suk:LU, 5wlc:LU, 6zqa:JP, 6zqb:JP, 6zqc:JP, 6zqd:JP
10 8h67:E 299 80 0.1645 0.0836 0.3125 6.1 8h67:F, 8h67:G, 8h67:H, 8h67:J, 8h67:I, 8h7q:C, 8h7q:E, 8h7q:F, 8h7q:G, 8h7q:H, 8h7q:I, 8ip0:B, 8ip0:C, 8ip0:D, 8ip0:N, 8ip0:H, 8ip0:I
11 4v6w:Cb 75 57 0.1316 0.2667 0.3509 8.0 6xu6:Cb, 6xu7:Cb, 6xu8:Cb
12 6khm:K 312 49 0.1184 0.0577 0.3673 8.5 6khl:A, 6khl:B, 6khm:A, 6khm:B, 6khm:C, 6khm:D, 6khm:E, 6khm:F, 6khm:G, 6khm:H, 6khm:I, 6khm:J, 6khm:L, 6khm:M, 6khm:N, 6khm:O, 6khm:P, 6khm:Q, 6khm:R, 6khm:S, 6khm:T, 6khm:U, 6khm:V, 6khm:X, 6khm:Y, 6khm:W, 6khm:Z
13 8h7q:B 251 80 0.1645 0.0996 0.3125 8.8 8h67:K, 8ip0:O
14 5y6p:B2 374 40 0.0921 0.0374 0.3500 9.3 5y6p:b3
15 6b9o:B 937 51 0.0987 0.0160 0.2941 10.0 6b9o:A, 6b9p:A, 6b9p:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218