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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
PETHINLKVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGG

The query sequence (length=79) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 4giv:A 192 79 1.0000 0.4115 1.0000 8.26e-54 4dz2:A, 4dz2:B, 4dz3:A, 4dz3:B, 4fn2:A, 4fn2:B, 4g50:A, 4g50:B, 4ggq:C, 4ggq:A, 4ggq:B, 4ggq:D, 4giv:B, 5klx:A, 5klx:B, 5klx:D, 5klx:C, 2ko7:A, 2l2s:A, 6o49:A, 6o49:B, 6o4a:A, 6o4a:B, 6o4a:C, 6o4a:D, 3uf8:A, 3uqa:A, 3uqb:A, 5v8t:A, 5v8t:B, 3vaw:A
2 6p81:A 440 78 0.9873 0.1773 1.0000 3.86e-50 7az5:A, 7az5:B, 7az5:C, 7az5:D, 7az6:A, 7az7:A, 7az8:A, 7az8:B, 7azc:A, 7azc:C, 7azc:B, 7azc:D, 7azd:A, 7azd:B, 7azd:D, 7azd:C, 7aze:A, 7aze:B, 7azf:A, 7azf:D, 7azf:B, 7azf:C, 7azg:A, 7azg:C, 7azg:B, 7azg:D, 7azg:E, 7azg:G, 7azg:F, 7azg:H, 7azk:A, 7azk:B, 7azk:C, 7azk:D, 7azl:A, 7azl:B, 7azl:C, 7azl:D, 3bep:B, 3bep:A, 8cix:A, 8ciy:A, 8ciz:A, 8ciz:B, 3d1e:A, 3d1f:A, 3d1f:B, 3d1g:A, 3d1g:B, 3f1v:A, 3f1v:B, 6fvl:A, 6fvl:B, 6fvl:C, 6fvl:D, 6fvm:A, 6fvm:B, 5jne:C, 5jne:G, 4k3k:A, 4k3k:B, 4k3l:A, 4k3l:B, 4k3m:A, 4k3m:B, 4k3o:A, 4k3o:B, 4k3p:A, 4k3q:A, 4k3q:B, 4k3r:A, 4k3s:A, 4k74:A, 4k74:B, 5m1s:C, 4mjp:B, 4mjq:A, 4mjq:B, 4mjr:A, 4mjr:B, 4n94:A, 4n94:B, 4n95:A, 4n96:A, 4n96:B, 4n97:A, 4n97:B, 4n98:A, 4n98:B, 4n99:A, 4n99:B, 4n9a:A, 4n9a:B, 1ok7:B, 4ovf:A, 4ovf:B, 4ovg:A, 4ovg:B, 4ovh:A, 8pat:A, 8pay:A, 4pnu:A, 4pnu:B, 4pnv:A, 4pnv:B, 4pnw:A, 4pnw:B, 3q4j:B, 3q4j:C, 3q4j:D, 3q4j:E, 3q4j:F, 3q4k:A, 3q4k:B, 3q4l:A, 3q4l:B, 3qsb:A, 3qsb:B, 3v62:A, 3v62:D, 8var:G
3 5yca:A 206 74 0.9241 0.3544 0.9865 6.66e-49 6a6w:A, 5yc2:A, 5yc2:C
4 5jne:A 351 75 0.9494 0.2137 1.0000 9.18e-49 3i2d:A, 5jne:E
5 2kqs:A 97 77 0.5063 0.4124 0.5195 2.99e-22 2asq:A, 8djh:A, 8dji:A, 6jxu:A, 6jxv:A, 6k5t:A, 2las:A, 6uyo:A, 6uyo:C, 6uyp:A, 6uyq:A, 6uyr:A, 6uys:A, 6uys:C, 6uyt:A, 6uyu:A, 6uyu:C, 6uyv:A, 6uyx:C, 6uyx:A, 6uyy:A, 6uyz:A, 6uyz:C, 6v7p:C, 6v7p:A, 6v7q:C, 6v7q:A, 6v7r:C, 6v7r:A, 6v7s:C, 6v7s:A, 4wjn:A, 4wjo:A, 4wjp:A, 4wjp:C, 4wjq:A, 4wjq:C
6 8uzh:B 626 72 0.6709 0.0847 0.7361 5.28e-20 4lxf:A, 8uqv:A, 8uqv:B, 8uqv:C, 8uqv:D, 8uzh:A
7 2n9e:B 95 78 0.4937 0.4105 0.5000 6.09e-19 5d2m:B, 5d2m:E, 6jxw:A, 6jxx:A, 6k5r:A, 2mp2:A, 2mp2:B, 2rpq:A
8 4zyn:B 385 52 0.2152 0.0442 0.3269 5.10e-04 4k7d:A, 4k7d:B, 4k7d:C, 4k95:A, 4k95:B, 4k95:C, 4k95:D, 4k95:E, 4k95:F, 4k95:G, 4k95:H, 4k95:I, 4k95:J, 4k95:K, 4k95:L, 7us1:A, 8w31:A, 4zyn:A
9 2vyc:A 755 34 0.1392 0.0146 0.3235 1.6 2vyc:B, 2vyc:C, 2vyc:D, 2vyc:E, 2vyc:F, 2vyc:G, 2vyc:H, 2vyc:I, 2vyc:J
10 4c5s:C 642 58 0.2152 0.0265 0.2931 2.5 4c5r:A, 4c5r:B, 4c5r:C, 4c5r:D, 4c5s:A, 4c5s:B, 4c5s:D
11 5og1:A 819 38 0.1899 0.0183 0.3947 3.1 5ofo:C, 5ofo:F, 5ofo:E, 5ofo:D, 5ofo:B, 5ofo:A, 5og1:E, 6rn2:A, 6rn2:B, 6rn2:C, 6rn2:D, 6rn2:F, 6rn2:E, 6rn3:A, 6rn3:B, 6rn3:C, 6rn3:D, 6rn3:E, 6rn4:B, 6rn4:C, 6rn4:D, 6rn4:E
12 4ciu:A 657 38 0.1899 0.0228 0.3947 3.1
13 1bt0:A 73 66 0.2152 0.2329 0.2576 3.3
14 6qs4:C 630 38 0.1899 0.0238 0.3947 3.5 5og1:C, 5og1:D, 6qs4:D, 6qs4:E, 6qs6:C, 6qs6:D, 6qs7:C, 6qs7:D, 6qs7:E, 6qs8:C, 6qs8:D, 6qs8:E
15 5wru:B 308 55 0.2152 0.0552 0.3091 6.8
16 7t30:A 666 35 0.1646 0.0195 0.3714 7.0 7t2r:A, 7t2r:F, 7t30:F
17 7v3x:V 437 31 0.1392 0.0252 0.3548 8.0 7v3x:U
18 6zhh:A 883 26 0.1392 0.0125 0.4231 8.1 6zhf:A, 6zhg:A, 6zhh:B, 6zhh:C, 6zhh:D, 6zhh:E, 6zhh:F, 6zhh:G, 6zhh:H
19 6idy:A 421 52 0.2278 0.0428 0.3462 8.2 6idy:B, 6idy:C

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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