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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
PEPQMVLSPLTSAAIFLVVTIDSGGEDTVRDLLSDVASLERAVGFRAQPDGRLSCVTGIGSEAWDRLFSGARPAGLHPFR
ELDGPVHRAVATPGDLLFHIRASRLDLCFALATEIMGRLRGAVTPQDEVHGFKYFDERDMLGFVAGTENPTGAAARRAVL
VGAEDPAFAGGSYAVVQKYLHDIDAWEGLSVEAQERVIGRRKMTDVELSDDVKPADSHVALTSVTGPDGSDLEILRDNMP
FGSVGREEFGTYFIGYARTPEVTETMLERMFLGTASAPHDRILDFSTAVTGSLFFTPAADFLED

The query sequence (length=304) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4gu7:A 310 304 0.9967 0.9774 0.9967 0.0 4gu7:B, 4gu7:C, 4gu7:D, 8pws:A, 8pws:B, 8pws:C, 8pws:D, 8pws:E, 8pws:F, 8pwy:A, 8pwy:B, 8pwy:C, 8pwy:D, 8pwy:E, 8pwy:F, 7qze:A, 7qze:B, 7qze:C, 7qze:D, 7qze:E, 7qze:F, 7qzf:A, 7qzf:B, 7qzf:C, 7qzf:D, 7qzf:E, 7qzf:F, 7qzg:A, 7qzg:B, 7qzg:C, 7qzg:D, 7qzg:E, 7qzg:F, 7qzh:A, 7qzh:B, 7qzh:C, 7qzh:D, 7qzh:E, 7qzh:F, 8rwy:A, 8rwy:B, 8rwy:C, 8rwy:D, 8rwy:E, 8rwy:F, 6yr4:A, 6yr4:B, 6yr4:C, 6yr4:D, 6yr4:E, 6yr4:F, 6yrc:A, 6yrc:B, 6yrc:C, 6yrc:D, 6yrc:E, 6yrc:F, 6yrd:A, 6yrd:B, 6yrd:C, 6yrd:D, 6yrd:E, 6yrd:F, 6yrj:A, 6yrj:B, 6yrj:C, 6yrj:D, 6yrj:E, 6yrj:F, 7zmj:A, 7zmj:B, 7zmj:C, 7zmj:D, 7zmj:E, 7zmj:F
2 7bok:A 309 304 0.6283 0.6181 0.6283 6.30e-139 7bok:B, 7bok:C, 7bok:D, 7bok:E, 7bok:F
3 3qns:A 311 303 0.5658 0.5531 0.5677 2.14e-120 4hov:A, 4hov:B, 4hov:C, 3qnr:A, 3qnr:B, 3qnr:C, 3vec:A, 3vec:B, 3vec:C, 3ved:A, 3ved:B, 3ved:C, 3vee:A, 3vee:B, 3vee:C, 3vef:A, 3vef:B, 3vef:C, 3veg:A, 3veg:B, 3veg:C
4 8u4z:A 313 309 0.5658 0.5495 0.5566 1.75e-114
5 7ylo:A 311 297 0.4046 0.3955 0.4141 5.58e-70 7ylo:B
6 2iiz:A 306 289 0.3487 0.3464 0.3668 1.34e-63
7 7yzt:A 306 257 0.3059 0.3039 0.3619 5.49e-56 7yzt:B, 7yzt:C
8 5de0:B 298 260 0.3322 0.3389 0.3885 2.35e-47 5de0:A, 5de0:C, 5de0:D
9 5vj0:D 300 298 0.3355 0.3400 0.3423 1.18e-43 5gt2:A, 5gt2:B, 5gt2:C, 5gt2:D, 5vj0:A, 5vj0:B, 5vj0:C
10 6fiy:B 303 263 0.2993 0.3003 0.3460 3.22e-41 6fiy:A, 6fks:A, 6fks:B, 6fkt:A, 6fkt:B, 6fl2:A, 6fl2:B, 6rpd:A, 6rpd:B, 6rpe:A, 6rpe:B, 6rqy:A, 6rqy:B, 6rr1:A, 6rr1:B, 6rr4:A, 6rr4:B, 6rr5:A, 6rr5:B, 6rr6:A, 6rr6:B, 6rr8:A, 6rr8:B
11 7o9j:B 307 260 0.2796 0.2769 0.3269 3.22e-41 7o9j:A, 7o9l:A, 7o9l:B, 7odz:A, 7odz:B, 8ohy:A
12 7qyq:B 284 251 0.2368 0.2535 0.2869 1.17e-12 7qyq:A, 7qyq:C, 7qyq:D, 7qyz:A, 7qza:A, 7qza:B, 7qza:C, 7qza:D, 7qza:E, 7qza:F, 7qza:G, 7qza:H
13 4gt2:A 371 149 0.1612 0.1321 0.3289 1.10e-09 4gt2:B, 4gt2:E, 4gt2:G, 6gzw:A, 6gzw:B, 5map:A, 5map:B, 5mjh:A, 5mjh:B
14 6jbn:A 391 168 0.1645 0.1279 0.2976 2.50e-07 6jbn:B
15 8ck9:A 374 77 0.1053 0.0856 0.4156 6.95e-07
16 5fw4:A 368 95 0.1151 0.0951 0.3684 2.51e-06 5fw4:B
17 8rgs:A 366 140 0.1447 0.1202 0.3143 5.47e-06 4grc:A, 6i43:A, 6i43:B, 6i7c:A, 6i7c:B, 6i7z:A, 6i7z:B, 6i8e:A, 6i8e:B, 6i8i:A, 6i8i:B, 6i8j:A, 6i8j:B, 6i8k:A, 6i8k:B, 6i8o:A, 6i8o:B, 6i8p:A, 6i8p:B, 6i8q:A, 6i8q:B, 6i91:A, 6i91:B, 6ibn:A, 6ibn:B, 8olh:A, 8olh:B, 8olp:A, 8olp:B, 8omc:A, 8omc:B, 8pxp:A, 8pxp:B, 6q31:A, 6q31:B, 6q34:A, 6q34:B, 6q3d:A, 6q3d:B, 6q3e:A, 6q3e:B, 8rgs:B, 8rgw:A, 8rgw:B, 8rgy:A, 8rgy:B, 6tb8:A, 6tb8:B
18 4gs1:B 376 247 0.2105 0.1702 0.2591 1.39e-05 4gs1:A
19 7dlk:A 363 142 0.1283 0.1074 0.2746 2.37e-05 7dlk:B, 7dlk:C, 7dlk:D, 7dlk:E, 7dlk:F, 7e5q:A, 7e5q:B, 6kmm:A, 6kmm:B, 6kmm:C, 6kmm:D, 6kmm:E, 6kmm:F, 6kmn:A, 6kmn:B, 6kmn:C, 6kmn:D, 7pkx:A, 7pkx:B, 7pl0:A, 7pl0:B, 7pl0:C, 7pl0:D
20 2y4e:A 384 182 0.1414 0.1120 0.2363 0.002 3o72:A, 3o72:B, 3o72:C, 3o72:D, 2y4e:B, 2y4f:A, 2y4f:B
21 6qzo:A 361 161 0.1480 0.1247 0.2795 0.19 6qzo:B, 6qzo:C, 6qzo:D, 6qzo:E, 6qzo:F, 6qzo:G, 6qzo:H
22 8fjq:B 361 75 0.0625 0.0526 0.2533 0.57 8fjq:A, 8fjr:A, 8fjr:B, 5jxu:A, 5jxu:B, 7rmu:A
23 6npo:A 518 36 0.0493 0.0290 0.4167 0.63
24 4hln:A 504 113 0.1020 0.0615 0.2743 0.81
25 8khf:4 75 27 0.0362 0.1467 0.4074 3.9 8ki3:4, 8ki3:5, 6tt7:3, 6tt7:4
26 4v6i:AS 144 79 0.0691 0.1458 0.2658 4.1 7a1g:J, 7aju:DT, 7b7d:I, 8bn3:C9, 8bqd:I, 8bqx:I, 8c00:I, 8c01:I, 8cah:J, 8cas:K, 8cbj:T, 8ccs:v, 8cdl:v, 8cdr:v, 8ceh:v, 8cf5:v, 8cg8:v, 8cgn:v, 8civ:v, 8cku:v, 8cmj:v, 7d4i:SU, 7d63:SU, 5dat:C9, 5dat:c9, 5dc3:C9, 5dc3:c9, 5dge:C9, 5dge:c9, 5dgf:C9, 5dgf:c9, 5dgv:C9, 5dgv:c9, 6eml:I, 8eub:BT, 8evp:BT, 8evq:BT, 8evr:BT, 8evs:BT, 8evt:BT, 8ewb:BT, 8ewc:BT, 6fai:T, 5fci:C9, 5fci:c9, 5fcj:C9, 5fcj:c9, 6gq1:AJ, 6gqb:AJ, 6gqv:AJ, 6hhq:U, 6hhq:c9, 5i4l:C9, 5i4l:c9, 6i7o:I, 6i7o:Ib, 3j6x:19, 3j6y:19, 3j77:19, 3j78:19, 5juo:QB, 5jup:QB, 5jus:QB, 5jut:QB, 5juu:QB, 8k2d:ST, 8k82:ST, 5lyb:C9, 5lyb:c9, 5m1j:T2, 5mc6:I, 5mei:c9, 5mei:U, 7mpi:BT, 7mpj:BT, 7n8b:BT, 5ndg:C9, 5ndg:c9, 5ndv:C9, 5ndv:c9, 5ndw:C9, 5ndw:c9, 7nrc:SI, 7nrd:SI, 5obm:C9, 5obm:c9, 5on6:c9, 5on6:U, 7osa:eS19, 7osm:eS19, 6q8y:I, 6rbd:T, 6rbe:T, 7rr5:ST, 6s47:BU, 6snt:T, 6sv4:I, 6sv4:Ib, 6sv4:Ic, 6t4q:ST, 6t7i:ST, 6t7t:ST, 6t83:Tb, 6t83:u, 5tbw:U, 5tbw:c9, 6tb3:I, 5tga:C9, 5tga:c9, 5tgm:C9, 5tgm:c9, 6tnu:I, 4u3m:C9, 4u3m:c9, 4u3n:C9, 4u3n:c9, 4u3u:C9, 4u3u:c9, 4u4n:C9, 4u4n:c9, 4u4o:C9, 4u4o:c9, 4u4q:C9, 4u4q:c9, 4u4r:C9, 4u4r:c9, 4u4u:C9, 4u4u:c9, 4u4y:C9, 4u4y:c9, 4u4z:C9, 4u4z:c9, 4u50:C9, 4u50:c9, 4u51:C9, 4u51:c9, 4u52:C9, 4u52:c9, 4u53:C9, 4u53:c9, 4u55:C9, 4u55:c9, 4u56:C9, 4u56:c9, 4u6f:C9, 4u6f:c9, 4uer:T, 4v7h:AT, 4v88:AT, 4v88:CT, 4v8y:AT, 4v8z:AT, 4v92:BT, 6wdr:T, 6woo:TT, 6xiq:AJ, 6xir:AJ, 8y0u:ST, 6y7c:T, 6z6j:ST, 6z6k:ST, 6zce:U, 7zpq:AT, 6zqd:DT, 6zqe:DT, 6zqf:DT, 6zqg:DT, 7zrs:AT, 6zu9:K, 7zuw:AT, 7zux:DT, 6zvi:B, 7zw0:sI
27 5ybb:D 390 57 0.0592 0.0462 0.3158 4.7 5ybb:G
28 5das:C 180 62 0.0691 0.1167 0.3387 5.6 5das:B, 5das:D, 4s1o:B
29 2oid:A 266 105 0.0921 0.1053 0.2667 5.6 6f3i:A, 2oid:C, 5uis:D, 5w84:B
30 5das:A 198 65 0.0658 0.1010 0.3077 5.7 6buv:B, 4s1o:A, 4ybr:A, 4ybr:B
31 3mjm:A 344 39 0.0493 0.0436 0.3846 6.5 2e25:A, 2eg6:A, 2eg6:B, 2eg7:A, 2eg7:B, 2eg8:A, 2eg8:B, 1j79:A, 1j79:B, 3mjm:B, 1xge:A, 1xge:B, 2z24:A, 2z24:B, 2z25:A, 2z25:B, 2z26:A, 2z26:B, 2z27:A, 2z27:B, 2z28:A, 2z28:B, 2z29:A, 2z29:B, 2z2a:A, 2z2a:B, 2z2b:A
32 5w1d:A 405 71 0.0724 0.0543 0.3099 7.3 6bwn:A, 6bxu:A, 6bxu:B
33 5t4m:A 347 71 0.0658 0.0576 0.2817 9.3 6e8f:A, 6e8f:C, 6e8f:B, 5t4m:B, 5t4n:A, 5t4n:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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