Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
PEPFYYLHNFRAVLAWIGERYADLLDDQERAFIAAFAELPEASQALLVRMVMRKGTLFREGKLAYAEIGDTRAAVQPLLA
LGWVDAQPTLELAQLFGLLKKDELSQLFRDHLGRANLRKDALLERLQPLFPEARRLAEWQADFAEPVYELRCMALCDRLR
LMYFGNLWQDWSEFVLADLGIYRYESVEFSADSRGFRLRADVDAYLHLFDCRQRFDLGEPLEELLAGLPGEPYANPWLEG
RRVKLLFQFAQHCEKQRDFDLAQRLYRQSSHPGARLRAIRSLERGERFAEAHALAREASCAPESDAERQGLARLLPRLQG
KLGLPRQARAAAPEIDRLDLCLAFPSEPCSVEWAVREHLEEPGCAVHYVENGLINSLFGLLCWEAIFAAIPGAFFHPFHS
APADLHSADFRQRRAALFEACLGRLEDGSYRDAIRCRYRDKFGLQSPFVYWELLGEELLEQALDCLPAAHLRAWFERLLE
DIPGNRAGLPDLIQFWPAQRRYRMVEVKGPGDRLQDNQLRWLQFCREREMPVAVCYV

The query sequence (length=537) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5y7q:A 546 537 1.0000 0.9835 1.0000 0.0 4r89:A, 4r89:E, 4r8a:A, 4r8a:F, 5y7g:A, 5y7g:B, 5y7g:C, 5z6w:A
2 4rib:B 628 198 0.1192 0.1019 0.3232 1.98e-16 4ri8:A, 4ri8:B, 4ri9:A, 4ri9:B, 4ria:A, 4ria:B, 4rib:A, 4ric:A, 4ric:B
3 4rib:B 628 125 0.0764 0.0653 0.3280 7.52e-09 4ri8:A, 4ri8:B, 4ri9:A, 4ri9:B, 4ria:A, 4ria:B, 4rib:A, 4ric:A, 4ric:B
4 4rec:A 593 198 0.1173 0.1062 0.3182 2.06e-15 4rea:B, 4rea:A
5 4rec:A 593 125 0.0764 0.0691 0.3280 1.55e-08 4rea:B, 4rea:A
6 4reb:A 566 199 0.1173 0.1113 0.3166 2.30e-15
7 4reb:A 566 125 0.0764 0.0724 0.3280 1.19e-08
8 2vyn:D 334 94 0.0447 0.0719 0.2553 0.11 2vyv:D
9 3h9e:P 337 94 0.0447 0.0712 0.2553 0.55 5c7o:O, 5c7o:P, 3h9e:O, 3pfw:O, 3pfw:P
10 2ep7:B 339 83 0.0466 0.0737 0.3012 1.5 2ep7:A
11 4uc0:A 247 100 0.0503 0.1093 0.2700 5.7
12 6hiy:DA 1426 58 0.0354 0.0133 0.3276 6.2
13 6hiv:DA 1557 58 0.0354 0.0122 0.3276 6.4 6hiw:DA, 7pub:DA
14 3cb3:A 373 75 0.0428 0.0617 0.3067 7.0 3cb3:B, 3cb3:C, 3cb3:D, 2og9:A, 2og9:B

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218