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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
PELRKDPVTNRWVIFSPFKSKSCPFCIGREQECAPELFRVPDHDPNWKLRVIENLYPALSRNLETRTIVGFGFHDVVIES
PVHSIQLSDIDPVGIGDILIAYKKRINQIAQHDSINYIQVFKNQGASAGASMSHSHSQMMALPVVPPTVSSRLDGTKDYF
EETGKCCLCEAKSKHFVIDESSHFVSVAPFAATYPFEIWIIPKDHSSHFHHLDDVKAVDLGGLLKLMLQKIAKQLNDPPY
NYMIHTSPLKVTESQLPYTHWFLQIVPQLSGVGGFEIGTGCYINPVFPEDVAKVMREVSLT

The query sequence (length=301) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 2h39:B 313 311 0.9867 0.9489 0.9550 0.0 2h39:A, 2q4h:A, 2q4h:B, 2q4l:A, 2q4l:B, 1z84:A, 1z84:B, 1zwj:A, 1zwj:B
2 6k5z:B 314 319 0.3090 0.2962 0.2915 8.15e-36 6k5z:A, 6k9z:A, 6k9z:B
3 1gup:A 347 296 0.2425 0.2104 0.2466 1.34e-18 1gup:B, 1gup:C, 1gup:D, 1guq:A, 1guq:B, 1guq:C, 1guq:D, 1hxp:A, 1hxp:B, 1hxq:A, 1hxq:B
4 6gqd:A 344 153 0.1329 0.1163 0.2614 6.29e-12 5in3:B, 5in3:A
5 3ksv:A 141 95 0.0831 0.1773 0.2632 0.002
6 4i5v:A 296 162 0.1395 0.1419 0.2593 1.7 4i5v:B, 4i5w:A, 4i5w:B
7 4gfh:A 1102 75 0.0797 0.0218 0.3200 3.3 4gfh:F, 3l4j:A, 3l4k:A, 1pvg:A, 1pvg:B, 1qzr:A, 1qzr:B, 2rgr:A
8 2ify:A 508 76 0.0532 0.0315 0.2105 4.2
9 4iib:A 834 28 0.0432 0.0156 0.4643 6.9 4iib:B, 4iic:A, 4iic:B, 4iid:A, 4iid:B, 4iie:A, 4iie:B, 4iif:A, 4iif:B, 4iig:A, 4iig:B, 4iih:A, 4iih:B
10 6iq1:B 145 97 0.0664 0.1379 0.2062 8.1 6iq1:A, 6iq1:C, 6iq1:D
11 4qvu:A 217 38 0.0299 0.0415 0.2368 8.7

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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