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BioLiP
>protein
PEKLIVDGLRLDGRKFDELRPIKIEASVLKRADGSCYLEMGKNKVIAAVFGPREVHPEHLQDPSKAIIRYRYNMAPFSVE
ERKRPGPDRRSIEISKVSKEAFEAVIMKELFPRSAIDIFVEVLQADAGSRTACLNAASVALVDAGVPMKGMITSVAVGKA
DGQLVLDPMKEEDNFGEADMPFAFLIRNGKIESIALLQMDGRMTRDEVKQAIELAKKGALQIYEMQREAILRRYIEVGEE
MDEITE

The query sequence (length=246) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3m7n:E 248 246 1.0000 0.9919 1.0000 2.13e-180 3m7n:F, 3m7n:D, 3m85:F, 3m85:D, 3m85:E
2 2pnz:A 236 235 0.5732 0.5975 0.6000 1.25e-101 2po0:A, 2po1:A, 2po2:A
3 2c39:D 248 240 0.5407 0.5363 0.5542 9.40e-93 4ba1:B, 4ba2:B, 2c37:B, 2c37:F, 2c37:N, 2c37:V, 2c37:X, 2c38:B, 2c38:F, 2c38:H, 2c38:J, 2c38:N, 2c38:V, 2c38:X, 2c39:B, 2c39:F, 2c39:H, 2c39:J, 2c39:L, 2c39:N, 2c39:P, 2c39:R, 2c39:T, 2c39:V, 2c39:X, 2jea:B
4 2wnr:B 222 222 0.5163 0.5721 0.5721 6.05e-88 2wnr:D, 2wnr:F
5 6d6q:B 241 226 0.3618 0.3693 0.3938 6.54e-53 6d6r:B
6 6fsz:BB 244 233 0.3211 0.3238 0.3391 2.88e-35 4ifd:B, 5jea:B, 5k36:B, 8qcf:C
7 1r6m:A 236 238 0.3130 0.3263 0.3235 1.48e-24
8 3dd6:A 244 238 0.2764 0.2787 0.2857 4.15e-22
9 4aim:A 698 244 0.3130 0.1103 0.3156 6.73e-21 4aid:A, 4aid:B, 4aid:C, 4am3:A, 4am3:C, 4am3:B
10 4aim:A 698 224 0.2154 0.0759 0.2366 3.55e-05 4aid:A, 4aid:B, 4aid:C, 4am3:A, 4am3:C, 4am3:B
11 5yjj:A 442 239 0.3049 0.1697 0.3138 2.01e-20 5yjj:B, 5yjj:C, 5yjj:D, 5yjj:E, 5yjj:F
12 7ogk:A 695 234 0.2846 0.1007 0.2991 1.74e-19 3gcm:A, 3gcm:B, 3gcm:C, 3h1c:A, 3h1c:B, 3h1c:C, 3h1c:K, 3h1c:G, 3h1c:I, 3h1c:M, 3h1c:O, 3h1c:R, 3h1c:T, 3h1c:V, 3h1c:X, 7ogk:B, 7ogk:C, 7ogm:L, 7ogm:N, 7ogm:O
13 7ogk:A 695 37 0.0610 0.0216 0.4054 0.80 3gcm:A, 3gcm:B, 3gcm:C, 3h1c:A, 3h1c:B, 3h1c:C, 3h1c:K, 3h1c:G, 3h1c:I, 3h1c:M, 3h1c:O, 3h1c:R, 3h1c:T, 3h1c:V, 3h1c:X, 7ogk:B, 7ogk:C, 7ogm:L, 7ogm:N, 7ogm:O
14 3gme:A 482 231 0.2764 0.1411 0.2944 6.75e-19
15 3gme:A 482 37 0.0610 0.0311 0.4054 0.76
16 8wx0:A 597 255 0.2846 0.1173 0.2745 6.52e-17 8wx0:B, 8wx0:C
17 8wx0:A 597 109 0.1341 0.0553 0.3028 0.33 8wx0:B, 8wx0:C
18 7ld5:A 587 258 0.2846 0.1193 0.2713 2.62e-16 7ld5:B, 7ld5:C
19 7ld5:A 587 110 0.1179 0.0494 0.2636 2.0 7ld5:B, 7ld5:C
20 1e3p:A 645 246 0.2724 0.1039 0.2724 5.94e-16
21 1e3p:A 645 88 0.1098 0.0419 0.3068 4.0
22 4ba2:A 274 251 0.2358 0.2117 0.2311 1.70e-13 2c37:I, 2c37:U, 2c38:G, 2c38:I, 2c38:U, 2c38:W, 2jea:A
23 6d6q:F 252 179 0.2195 0.2143 0.3017 4.76e-11 6d6r:F
24 3m85:I 259 226 0.2317 0.2201 0.2522 1.51e-08 3m7n:I, 3m7n:G, 3m7n:H, 3m85:G, 3m85:H
25 2pnz:B 267 96 0.1098 0.1011 0.2812 2.16e-07
26 6d6q:C 265 85 0.0894 0.0830 0.2588 0.023 6d6r:C
27 6l55:C 170 57 0.0732 0.1059 0.3158 0.61 6kzy:A, 6kzy:B, 6kzy:C, 6kzy:D, 6l55:A, 6l55:B, 6l55:D, 6l55:E, 6l55:F, 6l55:G, 6l55:H, 6l55:I, 6l55:J, 6l55:K, 6l55:L, 6l56:A, 6l56:B, 6l56:C, 6l56:D, 6l56:E, 6l56:F, 6l56:G, 6l56:H, 6l56:I, 6l56:J, 6l56:K, 6l56:L, 6l56:M, 6l56:N, 6l56:O, 6l56:P, 6l56:Q, 6l56:R, 6l56:S, 6l56:T, 6l56:U, 6l56:V, 6l56:W, 6l56:X, 6l58:A, 6l58:C, 6l58:B, 6l58:D
28 8hap:A 466 45 0.0813 0.0429 0.4444 1.9 8hap:B
29 6d6q:A 287 40 0.0610 0.0523 0.3750 2.9 6d6r:A
30 4ifd:A 300 47 0.0691 0.0567 0.3617 3.0 6fsz:AA
31 3hvr:A 660 38 0.0650 0.0242 0.4211 3.3 3hm9:A, 3hvr:B
32 6t5z:A 174 64 0.0650 0.0920 0.2500 3.5 6t5z:B, 6t5z:C
33 4n76:A 641 38 0.0650 0.0250 0.4211 3.5 5gq9:A, 3hxm:A
34 8gy3:A 440 46 0.0447 0.0250 0.2391 4.7
35 7od1:A 430 76 0.0854 0.0488 0.2763 5.3 7od1:B
36 7oni:H 380 76 0.0854 0.0553 0.2763 5.9
37 6ldo:A 381 67 0.0894 0.0577 0.3284 7.9 6ldo:B, 6ldo:C, 6ldo:D, 6ldo:E, 6ldo:F, 6le4:A, 6le4:B, 6le4:C, 6le4:D, 6le4:E, 6le4:F

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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