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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
PEIITPIITPFTKDNRIDKEKLKIHAENLIRKGIDKLFVNGTTGLGPSLSPEEKLENLKAVYDVTNKIIFQVGGLNLDDA
IRLAKLSKDFDIVGIASYAPYYYPRMSEKHLVKYFKTLCEVSPHPVYLYNVPTATGKDIDAKVAKEIGCFTGVKDCIENI
IHTLDYKRLNPNMLVYSGSDMLIATVASTGLDGNVAAGSNYLPEVTVTIKKLAMERKIDEALKLQFLHDEVIEASRIFGS
LSSNYVLTKYFQGYDLGYPRPPIFPLDDEEERQLIKKVEGIRAKLVELKILKE

The query sequence (length=293) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6g3z:A 293 293 0.9932 0.9932 0.9932 0.0 6g3z:B, 6gt8:A, 6gt8:B, 6gv2:A, 6gv2:B, 6h2s:A, 6h2s:B, 6h2s:C, 6h2s:D, 6h7s:A, 6h7s:B, 1w3i:A, 1w3i:B, 1w3i:C, 1w3i:D, 1w3n:A, 1w3n:B, 1w3n:C, 1w3n:D, 1w3t:A, 1w3t:B, 1w3t:C, 1w3t:D
2 2nuy:A 288 287 0.4846 0.4931 0.4948 9.99e-98 2nuy:B
3 2r94:A 286 284 0.4369 0.4476 0.4507 6.71e-88 2r94:D, 2r94:B, 2r94:C
4 3nev:A 298 232 0.2321 0.2282 0.2931 9.60e-26 3nev:B, 3nev:C, 3nev:D, 4oe7:A, 4oe7:B, 4oe7:C, 4oe7:D, 4onv:A, 4onv:B, 4onv:C, 4onv:D, 4ptn:A, 4ptn:B, 4ptn:C, 4ptn:D, 4u4m:A, 4u4m:B, 4u4m:C, 4u4m:D
5 4dxv:A 291 235 0.2491 0.2509 0.3106 1.11e-22 3pue:B, 3pul:B, 3rk8:A, 3rk8:B, 3tak:A, 3tak:B, 3tce:A, 3tce:B, 3tdf:A, 3tdf:B, 3u8g:A, 3u8g:B
6 7kkd:B 306 243 0.2389 0.2288 0.2881 1.13e-22 5f1u:A, 5f1u:B, 5f1u:C, 5f1u:D, 5f1v:A, 5f1v:C, 5f1v:B, 5f1v:D, 7kg2:A, 7kg2:C, 7kg2:B, 7kg2:D, 7kg2:E, 7kg2:F, 7kg5:A, 7kg5:B, 7kg5:C, 7kg5:E, 7kg5:F, 7kg9:A, 7kg9:E, 7kg9:B, 7kg9:C, 7kg9:D, 7kg9:F, 7kh4:A, 7kh4:F, 7kh4:B, 7kh4:C, 7kh4:D, 7kh4:E, 7kk1:A, 7kk1:B, 7kk1:C, 7kk1:D, 7kk1:E, 7kk1:F, 7kkd:A, 7kkd:F, 7kkd:E, 7kkd:C, 7kkd:D, 7kkg:A, 7kkg:D, 7kkg:B, 7kkg:E, 7kkg:C, 7kkg:F, 7kkt:A, 7kkt:F, 7kkt:B, 7kkt:E, 7kkt:C, 7kkt:D, 7kls:A, 7kls:F, 7kls:B, 7kls:C, 7kls:D, 7kls:E, 7klt:A, 7klt:C, 7klt:E, 7klt:F, 7kly:A, 7kly:D, 7kly:B, 7kly:C, 7kly:E, 7kly:F, 7km0:B, 7km0:C, 7km0:A, 7km0:D, 7km0:E, 7km0:F, 7km1:A, 7km1:B, 7km1:C, 7km1:D, 7km1:E, 7km1:F, 7kn9:A, 7kn9:B, 7kn9:C, 7kn9:D, 7kn9:E, 7kn9:F, 7knz:B, 7knz:C, 7knz:A, 7knz:D, 7knz:E, 7knz:F, 7ko3:A, 7ko3:B, 7ko3:C, 7ko3:D, 7ko3:E, 7ko3:F, 7kpc:A, 7kpc:B, 7kpc:C, 7kpc:D, 7kpc:E, 7kpc:F, 7kpe:B, 7kpe:C, 7kpe:A, 7kpe:D, 7kpe:E, 7kpe:F, 7kr7:A, 7kr7:E, 7kr7:B, 7kr7:C, 7kr7:D, 7kr7:F, 7kr8:B, 7kr8:D, 7kto:A, 7kto:B, 7kto:C, 7kto:D, 7kto:E, 7kto:F, 7ku6:D, 7kuz:A, 7kuz:F, 7kuz:B, 7kuz:C, 7kuz:D, 7kuz:E, 7kwf:B, 7kwf:F, 7kwf:A, 7kwf:C, 7kwf:D, 7kwf:E, 7kwn:B, 7kwp:A, 7kwp:B, 7kwp:C, 7kwp:D, 7kwp:E, 7kwp:F, 7kx1:A, 7kxg:A, 7kxg:C, 7kxg:B, 7kxg:D, 7kxg:E, 7kxg:F, 7kxh:A, 7kxh:D, 7kxh:B, 7kxh:C, 7kxh:E, 7kxh:F, 7kz2:A, 7kz2:D, 7kz2:B, 7kz2:C, 7kz2:E, 7kz2:F, 7lcf:A, 7lcf:B, 7lcf:F, 7lcf:C, 7lcf:D, 7lcf:I, 7lcf:E, 7lcf:G, 7lcf:H, 7lcf:J, 7lcf:K, 7lcf:L, 7m06:B, 7m06:C, 7m06:D, 4m19:A, 4m19:B, 4m19:C, 4m19:D, 4mlr:A, 4mlr:D, 4mlr:C, 4mlr:E, 4mlr:F, 4mlr:G, 4mlr:H, 6u01:B
7 1f74:A 293 295 0.2662 0.2662 0.2644 1.71e-21 1f73:A, 1f73:B, 1f73:C, 1f73:D, 1f74:C, 1f7b:A, 1f7b:C
8 4img:A 293 272 0.2526 0.2526 0.2721 3.44e-21 4imf:A, 4imf:B, 4img:B
9 5kzd:A 284 282 0.2389 0.2465 0.2482 8.90e-21 5kzd:B, 5kzd:C, 5kzd:D
10 2wpb:A 302 273 0.2287 0.2219 0.2454 1.28e-20 4bwl:A, 4bwl:B, 4bwl:C, 4bwl:D, 1fdy:A, 1fdy:B, 1fdy:C, 1fdy:D, 1fdz:A, 1fdz:B, 1fdz:C, 1fdz:D, 1hl2:A, 1hl2:B, 1hl2:C, 1hl2:D, 3lbc:D, 3lcw:A, 3lcw:B, 3lcw:C, 3lcw:D, 4uui:A, 4uui:B, 4uui:C, 4uui:D, 2wkj:C, 2wkj:D, 2wpb:B, 2wpb:C, 2wpb:D, 2xfw:A, 2xfw:B, 2xfw:C, 2xfw:D
11 4woq:C 290 279 0.2560 0.2586 0.2688 1.87e-20 4woq:D, 4woq:E, 4woq:F, 4woq:H, 4woz:B, 4woz:F
12 8u8w:A 297 278 0.2150 0.2121 0.2266 1.50e-19
13 5ktl:A 295 288 0.2594 0.2576 0.2639 2.58e-19 5ktl:B
14 4fha:A 307 285 0.2389 0.2280 0.2456 9.21e-18 4fha:B
15 5ud6:C 299 284 0.2389 0.2341 0.2465 1.96e-17 5ud6:A, 5ud6:B, 5ud6:D
16 5j5d:A 297 274 0.2560 0.2525 0.2737 2.55e-17 3l21:B, 1xxx:A, 1xxx:B, 1xxx:C, 1xxx:D, 1xxx:E, 1xxx:F, 1xxx:G, 1xxx:H
17 3di1:B 291 206 0.1980 0.1993 0.2816 7.95e-17 3di1:A
18 7lvl:A 296 237 0.2218 0.2196 0.2743 4.87e-15 7lvl:B, 7lvl:C, 7lvl:E, 7lvl:D, 7lvl:F, 7mjf:A, 7mjf:B, 7mjf:C, 7mjf:D, 7mjf:E, 7mjf:F
19 4i7w:A 294 258 0.2253 0.2245 0.2558 6.14e-15 4i7w:B
20 5c55:A 307 237 0.1980 0.1889 0.2447 7.50e-15 5c55:B
21 3na8:A 291 289 0.2423 0.2440 0.2457 1.57e-13 3na8:B, 3na8:C, 3na8:D
22 1o5k:A 295 216 0.1809 0.1797 0.2454 1.62e-13
23 5t25:A 293 240 0.2150 0.2150 0.2625 5.70e-13 2ats:A, 2ats:B, 3i7s:A, 3i7s:B, 7jz8:A, 7jz8:B, 7jza:A, 7jza:B, 7jzb:A, 7jzb:B, 7jzg:A, 7jzg:B, 5t25:B, 1yxd:A, 1yxd:B
24 4pfm:A 295 209 0.1911 0.1898 0.2679 1.13e-12 4pfm:B
25 6rb7:A 305 280 0.2014 0.1934 0.2107 1.22e-12 6rb7:B, 6rb7:E, 6rb7:F, 6rd1:A, 6rd1:B
26 4hnn:F 320 211 0.1945 0.1781 0.2701 2.79e-10 4hnn:A, 4hnn:B, 4hnn:C, 4hnn:D, 4hnn:E, 4hnn:G, 4hnn:H
27 6vvh:BBB 313 233 0.2048 0.1917 0.2575 3.87e-10 4dpq:A, 4dpq:B, 7mds:A, 7mds:B, 6vvh:AAA, 6vvh:CCC, 6vvh:DDD
28 3puo:A 292 204 0.1638 0.1644 0.2353 1.31e-09 3puo:B, 3s8h:A, 3s8h:B
29 5ui3:C 306 212 0.2014 0.1928 0.2783 1.98e-09 5ui3:D, 5ui3:A, 5ui3:B
30 3qfe:A 305 235 0.2082 0.2000 0.2596 9.22e-06
31 5hwn:B 310 273 0.2116 0.2000 0.2271 1.53e-04 5hwm:A, 5hwm:B, 5hwm:C, 5hwm:D, 5hwn:A, 5hwn:C, 5hwn:D, 4ur8:A, 4ur8:B, 4ur8:C, 4ur8:D
32 8rsj:A 262 45 0.0512 0.0573 0.3333 0.32 8rsi:A, 8rsi:B, 8rsj:B, 8rsk:A, 8rsk:B, 8rsk:C
33 8rsl:A 271 25 0.0375 0.0406 0.4400 0.59 5kiv:A, 8rsl:B
34 8rsm:A 254 31 0.0410 0.0472 0.3871 1.1
35 1lf9:A 674 71 0.0614 0.0267 0.2535 2.4 1lf9:B
36 6gmo:A 439 102 0.0819 0.0547 0.2353 4.3 6gmo:B, 2gwc:A, 2gwc:B, 2gwc:C, 2gwc:D, 2gwc:E, 2gwc:F, 2gwc:G, 2gwc:H, 2gwd:A
37 7yh2:A 156 24 0.0410 0.0769 0.5000 4.4 7yh2:B
38 6nlx:C 335 68 0.0648 0.0567 0.2794 6.2 6nlx:B, 6nlx:D, 5ur0:A, 5ur0:B, 5ur0:C, 5ur0:D
39 3e81:A 164 65 0.0683 0.1220 0.3077 7.6 3e81:B, 3e81:D, 3e81:C, 3e84:A, 3e84:B, 3e84:C, 3e84:D, 3e8m:A, 3e8m:B, 3e8m:C, 3e8m:D, 4hgo:A, 4hgo:B, 4hgo:C, 4hgo:D, 4hgq:A, 4hgq:B, 4hgq:C, 4hgq:D, 4hgq:E, 4hgq:F, 4hgq:G, 4hgq:H, 4hgr:A, 4hgr:B, 4hgr:C, 4hgr:D, 4hgr:E, 4hgr:F, 4hgr:G, 4hgr:H
40 8il4:C 619 27 0.0512 0.0242 0.5556 9.5 8il4:A, 8il4:B, 8il4:D
41 8hkj:B 430 117 0.1229 0.0837 0.3077 9.7 8hkj:A, 8hkj:C, 8hkj:D, 8hkj:E, 8hkj:F, 8hkj:H, 8hkj:J, 8hkj:K, 8hkj:L
42 7lba:B 310 33 0.0512 0.0484 0.4545 9.9 7lba:A, 7lba:C, 7lba:D, 7lba:E, 7lba:F, 7lba:G, 7lba:H, 7lba:I, 7lba:J, 7lba:K, 7lba:L, 7lba:M, 7lba:P, 7lba:Q, 7lol:A, 7lox:A, 7lox:B, 7lox:C

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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