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BioLiP
>protein
PEIDTLREEIDRLDAEILALVKRRAEVSKAIGKARMASGGTRLVHSREMKVIERYSELGPDGKDLAILLLRLGRGRLGH

The query sequence (length=79) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5ckx:D 79 79 1.0000 1.0000 1.0000 5.57e-50 5ckx:C, 2w1a:C, 2w1a:D
2 5hud:E 84 78 0.5823 0.5476 0.5897 2.58e-25 5hud:F, 5hud:G, 5hud:H
3 5gmu:B 87 47 0.2532 0.2299 0.4255 3.66e-05 5gmu:A
4 1ecm:B 95 54 0.2658 0.2211 0.3889 0.013 1ecm:A
5 3nvt:A 345 30 0.1392 0.0319 0.3667 0.38 3nvt:B, 3tfc:A, 3tfc:B
6 6k5j:A 526 50 0.2532 0.0380 0.4000 2.3
7 7otm:A 3656 52 0.2405 0.0052 0.3654 5.7 7otp:A, 7otv:A, 7otw:A, 7oty:A
8 6zhe:A 3768 52 0.2405 0.0050 0.3654 5.8
9 8yyr:A 496 58 0.2152 0.0343 0.2931 6.3 7dq5:A, 7dq5:B, 7dq6:A, 7dq6:B, 6m01:A, 8yyq:A
10 8fjq:B 361 29 0.1519 0.0332 0.4138 7.2 8fjq:A, 8fjr:A, 8fjr:B, 5jxu:A, 5jxu:B, 7rmu:A
11 8ckb:E066 503 44 0.1772 0.0278 0.3182 9.0 8ckb:E494, 8ckb:E264, 8ckb:E265, 8ckb:E506, 8ckb:E277, 8ckb:E009, 8ckb:E021, 8ckb:E030, 8ckb:E044, 8ckb:E053, 8ckb:E062, 8ckb:E071, 8ckb:E080, 8ckb:E088, 8ckb:E097, 8ckb:E106, 8ckb:E120, 8ckb:E129, 8ckb:E138, 8ckb:E142, 8ckb:E151, 8ckb:E160, 8ckb:E173, 8ckb:E182, 8ckb:E191, 8ckb:E195, 8ckb:E204, 8ckb:E213, 8ckb:E221, 8ckb:E230, 8ckb:E236, 8ckb:E245, 8ckb:E254, 8ckb:E269, 8ckb:E281, 8ckb:E292, 8ckb:E301, 8ckb:E310, 8ckb:E314, 8ckb:E323, 8ckb:E332, 8ckb:E345, 8ckb:E354, 8ckb:E363, 8ckb:E369, 8ckb:E378, 8ckb:E386, 8ckb:E395, 8ckb:E404, 8ckb:E418, 8ckb:E427, 8ckb:E436, 8ckb:E440, 8ckb:E449, 8ckb:E458, 8ckb:E471, 8ckb:E480, 8ckb:E489, 8ckb:E491, 8ckb:E492, 8ckb:E493, 8ckb:E497, 8ckb:E499, 8ckb:E503, 8ckb:E505, 8ckb:E507, 8ckb:E508, 8ckb:E509, 8ckb:E512, 8ckb:E513, 8ckb:E515, 8ckb:E517, 8ckb:E530, 7qof:D, 7qoh:B, 7qoh:C, 7qoh:D, 7qoh:A, 7qoh:E, 7qoh:F, 7qoi:AB, 7qoi:AC, 7qoi:AD, 7qoi:AE, 7qoi:BB, 7qoi:BD, 7qoi:CB, 7qoi:CD, 7qoi:CE, 7qoi:CF, 7qoi:DB, 7qoi:DE, 7qoi:DF, 7qoi:EB, 7qoi:ED

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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