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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
PEHYIKHPLQNRWALWFFKNKTWQANLRLISKFDTVEDFWALYNHIQLSSNLMPGCDYSLFKDGIEPMWEDEKNRWLITL
NKQQRRSDLDRFWLETLLCLIGESFDDYSDDVCGAVVNVRAKGDKIAIWTTENRDAVTHIGRVYKERLGLPKNRFVV

The query sequence (length=157) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5ei3:A 191 160 0.9554 0.7853 0.9375 1.44e-106 3am7:A, 4aza:A, 4aza:C, 4bea:A, 5bxv:A, 5bxv:C, 7d6y:A, 4dt6:A, 4dum:A, 5ehc:A, 5eir:A, 1ej1:A, 1ej1:B, 1ej4:A, 1ejh:A, 1ejh:B, 1ejh:C, 1ejh:D, 5ekv:A, 5ekv:C, 7ezw:A, 6gkj:A, 6gkj:B, 6gkj:C, 6gkj:D, 6gkk:A, 6gkk:B, 6gkk:C, 6gkk:D, 6gkl:A, 6gkl:B, 6gkl:C, 6gkl:D, 1ipb:A, 1ipc:A, 5j5o:A, 5j5o:B, 5j5o:C, 5j5o:D, 5j5y:A, 5j5y:B, 1l8b:A, 1l8b:B, 5m7v:A, 5m7v:B, 5m7v:C, 5m7w:A, 5m7w:B, 5m7w:C, 5m7w:D, 5m7x:A, 5m7x:B, 5m7x:C, 5m7x:D, 5m7z:A, 5m7z:B, 5m7z:C, 5m80:A, 5m80:B, 5m81:A, 5m81:B, 5m81:C, 5m81:D, 5m83:A, 5m83:B, 5m84:A, 5m84:B, 7meu:A, 7meu:B, 5osx:A, 5osx:B, 8sx4:A, 8sx4:B, 5t46:A, 5t46:C, 4tpw:A, 4tpw:B, 4tqb:A, 4tqb:B, 4tqc:A, 4tqc:B, 6u06:A, 6u06:B, 6u06:C, 6u06:D, 6u09:A, 6u09:B, 6u09:C, 6u09:D, 3u7x:A, 3u7x:B, 2v8w:A, 2v8w:E, 2v8x:A, 2v8x:E, 2v8y:A, 2v8y:E, 2w97:A, 2w97:B, 1wkw:A, 7xtp:A, 7xtp:B, 6ylr:A, 6ylr:B, 6ylt:A, 6ylt:B, 6ylt:C, 6ylt:D, 6ylv:A, 6ylv:B, 6ylv:C, 6ylv:D, 5zjy:A, 5zjz:A, 5zk5:A, 5zk7:A, 5zk7:B, 5zk9:A, 5zml:A
2 5abx:A 173 160 0.5350 0.4855 0.5250 1.53e-53
3 3m93:A 180 156 0.5096 0.4444 0.5128 6.46e-53 3m94:A
4 5t48:A 181 159 0.5223 0.4530 0.5157 4.64e-51 5abu:A, 4axg:B, 4uec:A, 4uec:C
5 2idv:A 177 154 0.4268 0.3785 0.4351 1.90e-35
6 6fbz:A 191 165 0.4204 0.3455 0.4000 3.30e-34
7 2wmc:A 174 152 0.4204 0.3793 0.4342 5.36e-33 2wmc:B, 2wmc:C, 2wmc:D, 2wmc:E, 2wmc:F, 2wmc:G, 2wmc:H
8 1ap8:A 213 156 0.3567 0.2629 0.3590 1.80e-30 6fc1:A, 6fc1:C, 1rf8:A
9 5me6:A 175 148 0.4076 0.3657 0.4324 3.41e-30 5me6:D
10 3hxg:A 183 155 0.3758 0.3224 0.3806 8.22e-28 3hxi:A
11 2jgb:A 187 165 0.3439 0.2888 0.3273 3.03e-26 2jgc:A, 5xln:A
12 4b6u:A 207 131 0.2484 0.1884 0.2977 8.05e-15
13 2a1t:C 388 52 0.1019 0.0412 0.3077 1.2 2a1t:A, 2a1t:B, 2a1t:D, 1egc:A, 1egc:B, 1egc:C, 1egc:D, 1egd:A, 1egd:B, 1egd:C, 1egd:D, 1ege:A, 1ege:B, 1ege:C, 1ege:D, 4p13:A, 4p13:B, 4p13:C, 4p13:D, 8sgp:A, 8sgp:B, 8sgp:C, 8sgp:D, 1t9g:A, 1t9g:B, 1t9g:C, 1t9g:D
14 3mdd:A 385 52 0.1019 0.0416 0.3077 3.0 3mdd:B, 3mde:A, 3mde:B, 1udy:A, 1udy:B, 1udy:C, 1udy:D
15 6i9a:A 453 100 0.1592 0.0552 0.2500 4.2 6i9a:B, 4rbm:A, 4tkx:L
16 6o7y:A 183 150 0.2038 0.1749 0.2133 4.2 6o7z:A, 6o80:A
17 3b59:A 301 70 0.1338 0.0698 0.3000 6.3 3b59:B, 3b59:C, 3b59:D, 3b59:E, 3b59:F
18 3red:A 521 40 0.1019 0.0307 0.4000 6.5 3red:B, 3red:C, 3red:D, 3red:E, 3red:F, 3red:G, 3red:H, 3red:I, 3red:J, 3red:K, 3red:L
19 8wvd:A 450 98 0.1465 0.0511 0.2347 6.7 6l8z:A
20 5juo:E 171 35 0.0637 0.0585 0.2857 9.9 5jup:E, 5jus:E, 5jut:E, 5juu:E

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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