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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
PEHYIKHPLQNRWALWFFKNDKSKTWQANLRLISKFDTVEDFWALYNHIQLSSNLMPGCDYSLFKDGIEPMWEDEKNKRG
GRWLITLNKQQRRSDLDRFWLETLLCLIGESFDDYSDDVCGAVVNVRAKGDKIAIWTTECENRDAVTHIGRVYKERLGLP
PKIVIGYQSHADTATKNRFVV

The query sequence (length=181) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5ei3:A 191 187 0.9945 0.9424 0.9626 2.40e-134 3am7:A, 4aza:A, 4aza:C, 4bea:A, 5bxv:A, 5bxv:C, 7d6y:A, 4dt6:A, 4dum:A, 5ehc:A, 5eir:A, 1ej1:A, 1ej1:B, 1ej4:A, 1ejh:A, 1ejh:B, 1ejh:C, 1ejh:D, 5ekv:A, 5ekv:C, 7ezw:A, 6gkj:A, 6gkj:B, 6gkj:C, 6gkj:D, 6gkk:A, 6gkk:B, 6gkk:C, 6gkk:D, 6gkl:A, 6gkl:B, 6gkl:C, 6gkl:D, 1ipb:A, 1ipc:A, 5j5o:A, 5j5o:B, 5j5o:C, 5j5o:D, 5j5y:A, 5j5y:B, 1l8b:A, 1l8b:B, 5m7v:A, 5m7v:B, 5m7v:C, 5m7w:A, 5m7w:B, 5m7w:C, 5m7w:D, 5m7x:A, 5m7x:B, 5m7x:C, 5m7x:D, 5m7z:A, 5m7z:B, 5m7z:C, 5m80:A, 5m80:B, 5m81:A, 5m81:B, 5m81:C, 5m81:D, 5m83:A, 5m83:B, 5m84:A, 5m84:B, 7meu:A, 7meu:B, 5osx:A, 5osx:B, 8sx4:A, 8sx4:B, 5t46:A, 5t46:C, 4tpw:A, 4tpw:B, 4tqb:A, 4tqb:B, 4tqc:A, 4tqc:B, 6u06:A, 6u06:B, 6u06:C, 6u06:D, 6u09:A, 6u09:B, 6u09:C, 6u09:D, 3u7x:A, 3u7x:B, 2v8w:A, 2v8w:E, 2v8x:A, 2v8x:E, 2v8y:A, 2v8y:E, 2w97:A, 2w97:B, 1wkw:A, 7xtp:A, 7xtp:B, 6ylr:A, 6ylr:B, 6ylt:A, 6ylt:B, 6ylt:C, 6ylt:D, 6ylv:A, 6ylv:B, 6ylv:C, 6ylv:D, 5zjy:A, 5zjz:A, 5zk5:A, 5zk7:A, 5zk7:B, 5zk9:A, 5zml:A
2 3m93:A 180 177 0.4972 0.5000 0.5085 9.19e-66 3m94:A
3 5abx:A 173 176 0.4917 0.5145 0.5057 1.11e-65
4 5t48:A 181 173 0.5083 0.5083 0.5318 3.98e-64 5abu:A, 4axg:B, 4uec:A, 4uec:C
5 2idv:A 177 184 0.4420 0.4520 0.4348 3.55e-43
6 6fbz:A 191 174 0.3978 0.3770 0.4138 8.54e-43
7 2wmc:A 174 178 0.4033 0.4195 0.4101 5.43e-40 2wmc:B, 2wmc:C, 2wmc:D, 2wmc:E, 2wmc:F, 2wmc:G, 2wmc:H
8 1ap8:A 213 157 0.3370 0.2864 0.3885 6.77e-37 6fc1:A, 6fc1:C, 1rf8:A
9 2jgb:A 187 173 0.3315 0.3209 0.3468 1.10e-36 2jgc:A, 5xln:A
10 3hxg:A 183 174 0.3591 0.3552 0.3736 7.67e-36 3hxi:A
11 5me6:A 175 178 0.3978 0.4114 0.4045 9.98e-36 5me6:D
12 4b6u:A 207 153 0.2486 0.2174 0.2941 2.10e-19
13 6o7y:A 183 138 0.1768 0.1749 0.2319 0.38 6o7z:A, 6o80:A
14 6uud:L 213 53 0.0884 0.0751 0.3019 0.71
15 7q4q:A 218 47 0.0773 0.0642 0.2979 0.89 7q4q:C, 7sgm:L, 7sgm:M, 7sgm:Y, 6w9g:L, 6w9g:M, 6w9g:Y
16 8jyq:E 164 47 0.0718 0.0793 0.2766 2.2 8jyq:B
17 8dy9:I 303 59 0.1105 0.0660 0.3390 2.3 8dy7:I
18 2a1t:C 388 52 0.0884 0.0412 0.3077 2.5 2a1t:A, 2a1t:B, 2a1t:D, 1egc:A, 1egc:B, 1egc:C, 1egc:D, 1egd:A, 1egd:B, 1egd:C, 1egd:D, 1ege:A, 1ege:B, 1ege:C, 1ege:D, 4p13:A, 4p13:B, 4p13:C, 4p13:D, 8sgp:A, 8sgp:B, 8sgp:C, 8sgp:D, 1t9g:A, 1t9g:B, 1t9g:C, 1t9g:D
19 3d0v:A 214 50 0.0829 0.0701 0.3000 2.8 3d0l:A, 3dro:A, 3drq:A, 3drt:A, 3egs:A, 2f5b:L, 3idg:A, 3idi:A, 3idj:A, 3idm:A, 3idn:A, 3moa:L, 3mob:L, 3mod:L, 2p8l:A, 2p8m:A, 2p8p:A, 2pw1:A, 2pw2:A, 1tjg:L, 1tjh:L, 1tji:L, 1u8h:A, 1u8i:A, 1u8j:A, 1u8k:A, 1u8l:A, 1u8m:A, 1u8n:A, 1u8o:A, 1u8p:A, 1u8q:A, 1u91:A, 1u92:A, 1u93:A, 1u95:A
20 4j1q:A 417 79 0.1050 0.0456 0.2405 5.0
21 5w5x:L 212 50 0.0829 0.0708 0.3000 5.3
22 3mdd:A 385 52 0.0884 0.0416 0.3077 5.8 3mdd:B, 3mde:A, 3mde:B, 1udy:A, 1udy:B, 1udy:C, 1udy:D
23 5xcu:B 165 57 0.0773 0.0848 0.2456 8.7 5xcs:B, 5xcu:E
24 3ays:A 357 84 0.1271 0.0644 0.2738 9.8

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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