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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
PEGSHQYELLKHAEATLGSGNLRQAVMLPEGEDLNEWIAVNTVDFFNQINMLYGTITEFCTEASCPVMSAYEYHWADGTN
IKKPIKCSAPKYIDYLMTWVQDQLDDETLFPSKIGVPFPKNFMSVAKTILKRLFRVYAHIYHQHFDSVMQLEEEAHLNTS
FKHFIFFVQEFNLIDRRELAPLQELIEKL

The query sequence (length=189) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5brk:A 194 192 0.9418 0.9175 0.9271 5.01e-130 5b5v:A, 5b5v:C, 5b5v:B, 5b5v:D, 5b5w:A, 5b6b:A, 5b6b:B, 5b6b:D, 5b6b:F, 5b6b:H, 5b6b:K, 5b6b:M, 5b6b:O, 5brm:A, 5brm:B, 5brm:C, 5brm:D, 5brm:E, 5brm:F, 4j1v:A, 4j1v:C, 4jiz:A, 6mcp:B, 6mcp:D, 6mcq:B, 6mcq:D, 1pi1:A, 5twf:A, 5twf:B, 5twg:A, 5twh:A, 5xqz:A, 5xqz:B
2 2hjn:A 206 193 0.5397 0.4951 0.5285 2.01e-63 5ncn:A
3 5ncm:A 183 177 0.3810 0.3934 0.4068 1.05e-48
4 7k36:H 177 152 0.1905 0.2034 0.2368 1.06e-04
5 5yf4:A 129 143 0.1640 0.2403 0.2168 0.18
6 4zme:A 262 44 0.0899 0.0649 0.3864 0.85 5dyj:A, 5dyj:B, 5e4h:A, 5e4h:B, 5e4h:C, 5e4h:D, 5e4h:E, 5e4h:F, 5e4h:G, 5e4h:H, 5e9e:A, 5e9e:B, 3lkm:A, 3lla:A, 3lla:B, 3lmh:A, 3lmh:B, 3lmi:A, 3lmi:B, 3lmi:C, 3lmi:D, 3pdt:A, 4zme:B, 4zmf:A, 4zmf:B, 4zs4:A, 4zs4:B
7 5mth:H 221 97 0.1111 0.0950 0.2165 1.2 5mo3:H, 5mp1:H, 5mp1:C, 5mp1:F, 5mp1:J, 5mp3:A, 5mp3:H, 5mp5:E, 5mp5:H, 5mp5:A, 5mth:A, 2y6s:D, 2y6s:H
8 5ec0:A 379 95 0.1323 0.0660 0.2632 1.3
9 2vu4:A 148 31 0.0529 0.0676 0.3226 4.4
10 6eri:AD 221 46 0.0688 0.0588 0.2826 5.6 5h1s:F, 5mlc:E, 5mmi:D, 5mmm:D, 5x8p:D, 5x8t:D
11 3eo3:A 288 101 0.1270 0.0833 0.2376 7.4 3eo3:B, 3eo3:C
12 2yhw:A 309 48 0.0794 0.0485 0.3125 9.9 2yhy:A, 2yi1:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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