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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
PEFFEFIEAPSYGPNAYAFDSDGELYASVEDGRIIKYDKPSNKFLTHAVASPIWNNALCENNTNQDLKPLCGRVYDFGFH
YETQRLYIADCYFGLGFVGPDGGHAIQLATSGDGVEFKWLYALAIDQQAGFVYVTDVSTKYDDRGVQDIIRINDTTGRLI
KYDPSTEEVTVLMKGLNIPGGTEVSKDGSFVLVGEFASHRILKYWLKGPKANTSEFLLKVRGPGNIKRTKDGDFWVASSD
NNGITVTPRGIRFDEFGNILEVVAIPLPYKGEHIEQVQEHDGALFVGSLFHEFVGILHNYK

The query sequence (length=301) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6s5m:A 306 301 1.0000 0.9837 1.0000 0.0 6s5j:A, 6s5q:A, 6s5u:A, 6s5u:C, 6s5u:B, 6s5u:D, 6s5u:E, 6s5u:F
2 8wkl:G 307 297 0.5947 0.5831 0.6027 1.87e-133 2fpb:A, 2fpb:B, 2fpc:A, 2fpc:B, 4imb:A, 4iyg:A, 6n5v:A, 6n5v:B, 7t5i:A, 7t5i:B, 7t5j:A, 3v1s:A, 3v1s:B, 2v91:A, 2v91:B, 2vaq:A, 2vaq:B, 8wkl:A, 8wkl:B, 8wkl:C, 8wkl:D, 8wkl:E, 8wkl:F, 8wkl:H
3 6zea:A 308 297 0.5648 0.5519 0.5724 2.52e-125
4 7riz:A 306 115 0.1096 0.1078 0.2870 0.10 8djf:A, 8djz:A, 8dk0:A, 7ris:A
5 2cbn:A 306 29 0.0399 0.0392 0.4138 1.1
6 6h0a:A 339 40 0.0432 0.0383 0.3250 1.4 6g82:A, 6gmu:A, 4hho:A, 4hhq:A, 4q1u:A, 3sre:A, 3srg:A, 1v04:A
7 3c0o:A 450 88 0.0797 0.0533 0.2727 3.7 3c0o:B
8 2h6l:A 140 102 0.0897 0.1929 0.2647 5.2 2h6l:B, 2h6l:C
9 2hyd:A 578 45 0.0465 0.0242 0.3111 5.5 2hyd:B, 2onj:A, 2onj:B
10 7xqs:A 274 69 0.0598 0.0657 0.2609 6.9 7xqt:A
11 2j0d:B 445 82 0.0698 0.0472 0.2561 8.8 9bbb:A, 6bdh:A, 6dab:A, 8ewd:A, 8ewm:A, 8ewn:A, 8exb:A, 7ksa:A, 7kvh:B, 7kvs:B, 7uay:A, 7uaz:A, 7uf9:A, 6uni:A, 6unj:A, 6unj:B, 6unl:A, 6unm:A, 6unm:B
12 7kvj:A 415 82 0.0698 0.0506 0.2561 9.6

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218