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BioLiP
>protein
PEDLGTGLLEALLRGDLAGAEALFRRGLRFWGPEGVLEHLLLPVLREVGEAWARGEIGVAEEHLASTFLRARLQELLDLA
GFPPGPPVLVTTPPGERHEIGAMLAAYHLRRKGVPALYLGPDTPLPDLRALARRLGAGAVVLSAVLSEPLRALPDGALKD
LAPRVFLGGQGAGPEEARRLGAEYMEDLKGLAEAL

The query sequence (length=195) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5c8d:E 280 195 0.9949 0.6929 0.9949 1.32e-128 8c31:A, 8c31:B, 8c31:C, 8c31:D, 8c32:A, 8c32:B, 8c32:C, 8c32:D, 8c33:A, 8c33:B, 8c33:C, 8c33:D, 8c34:A, 8c34:B, 8c34:C, 8c34:D, 8c35:A, 8c35:B, 8c35:C, 8c35:D, 8c36:A, 8c36:B, 8c36:C, 8c36:D, 8c37:A, 8c37:B, 8c37:C, 8c37:D, 8c73:A, 8c73:B, 8c73:C, 8c73:D, 8c76:A, 8c76:B, 8c76:C, 8c76:D, 5c8a:A, 5c8a:B, 5c8a:C, 5c8a:D, 5c8d:A, 5c8d:B, 5c8d:C, 5c8d:D, 5c8d:F, 5c8d:G, 5c8d:H, 5c8e:A, 5c8e:B, 5c8e:C, 5c8e:E, 5c8e:F, 5c8e:G, 5c8e:D, 5c8e:H, 5c8f:A, 3whp:A
2 7te2:A 205 71 0.1590 0.1512 0.4366 3.54e-10
3 8j2y:A 327 154 0.2513 0.1498 0.3182 1.80e-06 8j2y:B
4 8j2x:A 337 184 0.3026 0.1751 0.3207 4.78e-04 8j2w:A, 8j2w:B
5 4jgi:B 206 147 0.1846 0.1748 0.2449 0.011 4jgi:A
6 4z17:A 424 98 0.1692 0.0778 0.3367 0.042 4yws:A, 4z17:B, 4z1y:A, 4z1y:B
7 3c9h:B 339 64 0.0974 0.0560 0.2969 0.51 3c9h:A
8 7xcn:P 215 104 0.1231 0.1116 0.2308 0.53 7xcn:M, 7xcn:N, 7xcn:O, 7xcn:Q, 7xcn:R
9 4ywe:A 476 94 0.1641 0.0672 0.3404 1.2 4ywe:B, 4ywe:C, 4ywe:D, 4ywe:E, 4ywe:F, 4ywe:G, 4ywe:H
10 2fge:A 979 77 0.1231 0.0245 0.3117 2.6 2fge:B
11 8swu:A 269 35 0.0821 0.0595 0.4571 3.0 8swu:B, 8swu:C
12 7acs:A 140 75 0.1179 0.1643 0.3067 3.5 7act:A, 8iv3:D, 8j6x:A, 8j6x:D, 6vyo:A, 6vyo:B, 6vyo:C, 6vyo:D, 6wkp:B, 6wkp:C, 6wkp:D, 7xwz:A, 7xwz:B, 7xx1:A, 7xx1:B, 7xx1:C, 7xx1:D
13 8ppg:B 243 95 0.1436 0.1152 0.2947 5.6
14 5af7:B 391 131 0.1487 0.0742 0.2214 7.6 5af7:A, 5ahs:A, 5ahs:B, 5ahs:C, 5ahs:E, 5ahs:F, 5ahs:D
15 8ppb:A 276 94 0.1436 0.1014 0.2979 8.2 8pp8:A, 8pp8:B, 8pp9:A, 8pp9:B, 8ppa:A, 8ppa:B, 8ppb:B, 8ppc:A, 8ppc:B, 8ppd:A, 8ppd:B, 8ppe:A, 8ppe:B, 8ppf:A, 8ppf:B, 8ppg:A, 8pph:A, 8pph:B, 8ppi:A, 8ppi:B, 8ppj:A, 8ppj:B, 1tzd:A, 1tzd:B, 1w2c:A, 1w2c:B, 1w2d:A, 1w2d:B
16 7xx4:A 395 92 0.1487 0.0734 0.3152 9.8 2iyf:A, 2iyf:B, 4m83:A, 4m83:B, 7xx4:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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