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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
PDTLLLEKHADYIASYGSKKDDYEYCMSEYLRMSGIYWGLTVMDLMGQLHRMNREEILAFIKSCQHECGGISASIGHDPH
LLYTLSAVQILTLYDSINVIDVNKVVEYVKGLQKEDGSFAGDIWGEIDTRFSFCAVATLALLGKLDAINVEKAIEFVLSC
MNFDGGFGCRPGSESHAGQIYCCTGFLAITSQLHQVNSDLLGWWLCERQLPDVCYSWWVLASLKIIGRLHWIDREKLRNF
ILACQDEETGGFADRPGDMVDPFHTLFGIAGLSLLGEEQIKPVNPVFCMPEEVLQRVN

The query sequence (length=298) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1dce:B 329 310 0.9597 0.8693 0.9226 0.0 3c72:B, 1dce:D, 3dss:B, 3dst:B, 3dsu:B, 3dsv:B, 3dsw:B, 3dsx:B, 4ehm:B, 4gts:B, 4gtt:B, 4gtv:B, 3hxb:B, 3hxc:B, 3hxd:B, 3hxe:B, 3hxf:B, 6j6x:B, 6j74:B, 6j7f:B, 6j7x:B, 1ltx:B, 6o60:B, 3pz1:B, 3pz2:B, 3pz3:B
2 1n4p:B 346 316 0.3054 0.2630 0.2880 6.74e-35 1n4p:D, 1n4p:F, 1n4p:H, 1n4p:J, 1n4p:L, 1n4q:B, 1n4q:D, 1n4q:F, 1n4q:H, 1n4q:J, 1n4q:L, 1n4r:B, 1n4r:D, 1n4r:F, 1n4r:H, 1n4r:J, 1n4r:L, 1n4s:B, 1n4s:D, 1n4s:F, 1n4s:H, 1n4s:L, 1n4s:J, 8rdx:B, 8rdx:D, 8rdx:F, 8rdx:H, 8rdx:J, 8rdx:L, 1s64:B, 1s64:D, 1s64:F, 1s64:H, 1s64:J, 1s64:L, 1tnb:B, 1tnb:D, 1tnb:F, 1tnb:H, 1tnb:J, 1tnb:L, 1tno:B, 1tno:D, 1tno:F, 1tno:H, 1tno:J, 1tno:L, 1tnu:B, 1tnu:D, 1tnu:F, 1tnu:H, 1tnu:J, 1tnu:L, 1tny:B, 1tny:D, 1tny:F, 1tny:H, 1tny:J, 1tny:L, 1tnz:B, 1tnz:D, 1tnz:F, 1tnz:H, 1tnz:J, 1tnz:L
3 1ft1:B 416 340 0.3154 0.2260 0.2765 1.49e-32 2bed:B, 1d8d:B, 1d8e:B, 3dpy:B, 3e30:B, 3e32:B, 3e33:B, 3e34:B, 3e37:B, 8e9e:B, 3eu5:B, 3euv:B, 2f0y:B, 1fpp:B, 1ft2:B, 4gtm:B, 4gto:B, 4gtp:B, 4gtq:B, 4gtr:B, 2h6f:B, 2h6g:B, 2h6h:B, 2h6i:B, 2iej:B, 1jcq:B, 1jcr:B, 1jcs:B, 3ksl:B, 3ksq:B, 1kzo:B, 1kzp:B, 1ld7:B, 1ld8:B, 1mzc:B, 1n94:B, 1n95:B, 1n9a:B, 1ni1:B, 1nl4:B, 1o1r:B, 1o1s:B, 1o1t:B, 1o5m:B, 3pz4:B, 1qbq:B, 2r2l:B, 7rn5:B, 7rni:B, 1s63:B, 1sa4:B, 1sa5:B, 1tn6:B, 1tn7:B, 1tn8:B, 1x81:B, 2zir:B, 2zis:B
4 4ydo:B 412 328 0.2886 0.2087 0.2622 4.87e-21 4yde:B
5 4l9p:B 452 290 0.2584 0.1704 0.2655 3.21e-17 4lnb:B, 4lng:B, 4mbg:B
6 3dra:B 364 266 0.2248 0.1841 0.2519 1.49e-15
7 7t09:B 497 357 0.2651 0.1590 0.2213 2.72e-13 3q73:B, 3q75:B, 3q78:B, 3q79:B, 3q7a:B, 3q7f:B, 3sfx:B, 3sfy:B, 7t08:B, 7t0a:B, 7t0b:B, 7t0c:B, 7t0d:B, 7t0e:B, 8t70:B
8 2sqc:A 623 72 0.0839 0.0401 0.3472 0.028 1gsz:A, 1gsz:B, 1gsz:C, 1h35:A, 1h35:B, 1h35:C, 1h36:A, 1h36:B, 1h36:C, 1h37:A, 1h37:B, 1h37:C, 1h39:A, 1h39:B, 1h39:C, 1h3a:A, 1h3a:B, 1h3a:C, 1h3b:A, 1h3b:B, 1h3b:C, 1h3c:A, 1h3c:B, 1h3c:C, 1o6h:A, 1o6h:B, 1o6h:C, 1o6q:A, 1o6q:B, 1o6q:C, 1o6r:A, 1o6r:B, 1o6r:C, 1o79:A, 1o79:B, 1o79:C, 2sqc:B, 1ump:A, 1ump:B, 1ump:C
9 2sqc:A 623 73 0.0638 0.0305 0.2603 8.0 1gsz:A, 1gsz:B, 1gsz:C, 1h35:A, 1h35:B, 1h35:C, 1h36:A, 1h36:B, 1h36:C, 1h37:A, 1h37:B, 1h37:C, 1h39:A, 1h39:B, 1h39:C, 1h3a:A, 1h3a:B, 1h3a:C, 1h3b:A, 1h3b:B, 1h3b:C, 1h3c:A, 1h3c:B, 1h3c:C, 1o6h:A, 1o6h:B, 1o6h:C, 1o6q:A, 1o6q:B, 1o6q:C, 1o6r:A, 1o6r:B, 1o6r:C, 1o79:A, 1o79:B, 1o79:C, 2sqc:B, 1ump:A, 1ump:B, 1ump:C
10 1w6j:A 727 72 0.0671 0.0275 0.2778 1.5 1w6k:A
11 1g6r:B 237 20 0.0302 0.0380 0.4500 4.6 3e2h:C, 3e3q:E, 3e3q:F, 3e3q:e, 3e3q:J, 3e3q:N, 3e3q:S, 3e3q:W, 3e3q:a, 2e7l:C, 2e7l:D, 1g6r:D, 6g9q:H, 1l0y:A, 1l0y:C, 5m00:H, 5m01:H, 5m02:H, 3mbe:D, 3mbe:H, 1mwa:B, 1mwa:D, 2oi9:C, 1tcr:B, 5til:H, 5til:L, 5tje:H, 5tje:F
12 5joz:A 507 40 0.0403 0.0237 0.3000 5.8 5joz:B
13 8wte:D 239 20 0.0302 0.0377 0.4500 6.5 7na5:E, 8wte:B, 8wul:D, 8wul:B, 8wul:F, 8wul:H
14 6wmp:C 1196 44 0.0436 0.0109 0.2955 7.6 6wmr:C, 6wmt:C
15 2qfc:A 284 134 0.1174 0.1232 0.2612 8.7 2qfc:B, 3u3w:A, 3u3w:B
16 5w81:A 1173 28 0.0503 0.0128 0.5357 8.8

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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