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BioLiP
>protein
PDSLFAGLVGEYYGTNSQLNNISDFRALVDSKEADATFEAANISYGRGSSDVAKGTHLQEFLGSDASTLSTDPGDNTDGG
IYLQGYVYLEAGTYNFKVTADDGYEITINGNPVATVDNNQSVYTVTHASFTISESGYQAIDMIWWDQGGDYVFQPTLSAD
GGSTYFVLDSAILSSTGETPYT

The query sequence (length=182) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5j6y:A 188 182 1.0000 0.9681 1.0000 2.42e-131 6x7j:A, 6x7t:A, 6x7x:A, 6x7y:A, 6x7z:A, 6x8a:A, 6x8d:A, 6x8y:A, 6x95:A, 6x9m:A, 6x9p:A, 6xa5:A, 6xac:A, 6xaq:A
2 6m8m:A 177 162 0.3626 0.3729 0.4074 4.69e-36
3 3sfz:A 1133 74 0.1264 0.0203 0.3108 0.046 3shf:A
4 6w1f:A 280 93 0.1593 0.1036 0.3118 0.082 7ji0:A, 7ji0:B, 6w1f:B
5 3qgv:A 435 48 0.0824 0.0345 0.3125 1.0
6 3ndz:A 345 36 0.0549 0.0290 0.2778 2.8 3ndz:C, 3ndz:B, 3ndz:D
7 2wt0:A 300 34 0.0769 0.0467 0.4118 3.5 2wsv:A, 2wt1:A, 2wt2:A, 2wt2:B
8 6akz:A 451 45 0.0824 0.0333 0.3333 3.7
9 3sqs:A 386 47 0.0879 0.0415 0.3404 8.0

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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