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BioLiP
>protein
PDIDWKQLRDKATQVAAGAYAPYSRFPVGAAALVDDGRVVTGCNVENVSYGLALCAECGVVCALHATGGGRLVALACVDG
RGAPLMPCGRCRQLLFEHGGPELLVDHLAGPRRLGDLLPEP

The query sequence (length=121) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 4f3w:B 121 121 1.0000 1.0000 1.0000 2.57e-84 4f3w:A, 4f3w:C, 4f3w:D
2 4wig:A 126 119 0.7851 0.7540 0.7983 3.77e-66 3ijf:X, 4wif:A, 4wif:B, 4wig:B
3 3mpz:A 125 118 0.7190 0.6960 0.7373 2.31e-58 3mpz:B, 3mpz:C, 3mpz:D
4 6kw6:A 119 118 0.6860 0.6975 0.7034 1.01e-53 6kw6:B
5 3r2n:D 122 119 0.6033 0.5984 0.6134 1.87e-51 3r2n:A, 3r2n:B, 3r2n:C
6 2d30:A 124 122 0.4132 0.4032 0.4098 1.64e-23 2d30:B
7 3dmo:A 133 106 0.3967 0.3609 0.4528 3.86e-21 3dmo:B, 3dmo:C, 3dmo:D
8 1jtk:A 131 103 0.3140 0.2901 0.3689 5.15e-18 1jtk:B, 1uwz:A, 1uwz:B, 1ux0:A, 1ux0:B, 1ux1:A, 1ux1:B, 1ux1:C, 1ux1:D
9 2fr6:A 137 95 0.3223 0.2847 0.4105 1.04e-17 2fr5:A, 2fr5:C, 2fr5:B, 2fr5:D, 2fr6:C, 2fr6:B, 2fr6:D, 1zab:A, 1zab:C, 1zab:B, 1zab:D
10 1mq0:A 130 95 0.3140 0.2923 0.4000 7.37e-17 1mq0:B
11 7zob:E 136 97 0.3223 0.2868 0.4021 8.12e-16 7zob:A, 7zob:B, 7zob:C, 7zob:D, 7zob:F, 7zob:G, 7zob:H
12 1r5t:A 141 128 0.3554 0.3050 0.3359 1.14e-12 1r5t:B, 1r5t:C, 1r5t:D
13 3oj6:A 134 121 0.3967 0.3582 0.3967 6.12e-10 3oj6:B, 3oj6:C, 3oj6:D
14 2z3i:A 129 101 0.3140 0.2946 0.3762 5.33e-07 1wn5:A, 1wn5:B, 1wn5:C, 1wn5:D, 1wn6:A, 1wn6:B, 2z3g:A, 2z3g:B, 2z3g:C, 2z3g:D, 2z3h:A, 2z3h:B, 2z3h:C, 2z3h:D, 2z3i:B, 2z3i:C, 2z3i:D, 2z3j:A, 2z3j:B, 2z3j:C, 2z3j:D
15 4eg2:A 297 110 0.2975 0.1212 0.3273 3.50e-04 4eg2:B, 4eg2:C, 4eg2:D, 4eg2:E, 4eg2:F, 4eg2:G, 4eg2:H
16 6k63:A 294 44 0.1322 0.0544 0.3636 0.011 6k63:B, 6k63:C, 6k63:D
17 6k63:A 294 87 0.2149 0.0884 0.2989 1.2 6k63:B, 6k63:C, 6k63:D
18 1af2:A 294 103 0.2727 0.1122 0.3204 0.018 1aln:A, 1ctt:A, 1ctu:A
19 1af2:A 294 50 0.1322 0.0544 0.3200 0.033 1aln:A, 1ctt:A, 1ctu:A
20 4imp:A 520 43 0.1405 0.0327 0.3953 0.029 4imp:B, 4imp:C, 4imp:D
21 4ccr:D 191 84 0.2149 0.1361 0.3095 1.3
22 7xrl:D 554 45 0.0992 0.0217 0.2667 1.7 3auj:A, 3auj:L, 1dio:A, 1dio:L, 1eex:A, 1eex:L, 1egm:A, 1egm:L, 1egv:A, 1egv:L, 1iwb:A, 1iwb:L, 1uc4:A, 1uc4:L, 1uc5:A, 1uc5:L, 7xrk:A, 7xrk:D, 7xrl:A, 5yrt:A, 5yrt:D, 5yrt:G, 5yrt:J, 5yrv:A, 5yrv:D, 5yrv:G, 5yrv:J, 5ysh:A, 5ysh:D, 5ysh:G, 5ysh:J
23 3iiv:B 262 21 0.0909 0.0420 0.5238 2.2 7ac8:A, 7ac8:C, 7ac8:E, 6ct3:A, 5d2t:A, 5d2w:A, 6dc1:A, 6dc1:B, 6dc1:H, 6dc1:K, 6dkv:A, 6dnj:A, 1gpw:C, 1gpw:E, 6rtz:A, 6ru0:A, 6ru0:C, 6ru0:E, 2wjz:A, 2wjz:C
24 1iyb:A 208 39 0.1074 0.0625 0.3333 2.8 1iyb:B
25 6ueb:A 2099 34 0.1157 0.0067 0.4118 3.2
26 3hxu:A 441 54 0.1322 0.0363 0.2963 4.1 3hxv:A, 3hxw:A, 3hxx:A, 3hxy:A, 3hxz:A, 3hxz:B, 3hxz:C, 3hxz:D, 3hy0:A, 3hy0:B, 3hy1:A
27 7qc8:A 250 19 0.0992 0.0480 0.6316 5.3 4ewn:D, 2wjz:E, 3zr4:E
28 7r3a:A 411 32 0.1074 0.0316 0.4062 5.8 7r3a:B, 7r3a:C, 7r3a:D, 7r3a:E, 7r3a:F, 7r3a:G, 7r3a:H
29 8iav:A 451 35 0.1405 0.0377 0.4857 8.6 8iav:B
30 3st1:A 212 71 0.1818 0.1038 0.3099 9.7

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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