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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
PDFIYDDRPAAVSSTFNPEKGYMDFITAYGKNINADNVRIFFLNHKKAKDSLKGSPKVEVDLQFGTLRVKVVNNHNPRNR
DNPVADNAITLHRLSGYLAKWCFDEIDHGQIEEAEVKSKVVIPLAEAKGCKWGDGVALYLAFAPGAEMFLKDFEFYPLAI
DIQRVVKDGMDITFMRKVLKQRYGTKTADDWMISEVTAIQSAVKVVAKLPWAKAGFTAAAKNFLAKFNISV

The query sequence (length=231) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4j1j:C 234 231 1.0000 0.9872 1.0000 6.33e-174 4j1g:A, 4j1g:D, 4j1g:C, 4j1g:B, 4j1j:A, 4j1j:B, 4j1j:D
2 4jng:A 226 226 0.5195 0.5310 0.5310 2.45e-90 4jng:B, 4jng:C, 4jng:D
3 4bhh:F 232 230 0.4372 0.4353 0.4391 6.71e-69 4bhh:B, 4bhh:D, 4bhh:Z
4 4ijs:A 232 228 0.4069 0.4052 0.4123 1.06e-62 4ijs:B, 4ijs:C, 4ijs:D, 3zla:A, 3zla:B, 3zla:C, 3zla:D, 3zla:E, 3zla:F, 3zla:G, 3zla:H
5 8ayz:A 278 28 0.0606 0.0504 0.5000 3.2 1eah:1, 3epf:1
6 4ue0:B 115 28 0.0563 0.1130 0.4643 3.8
7 1po1:1 283 53 0.0736 0.0601 0.3208 4.1 1po2:1, 1vbd:1
8 5b7i:A 1044 40 0.0476 0.0105 0.2750 4.1
9 6f6t:B 677 57 0.0563 0.0192 0.2281 7.7 6f6t:A, 6hqf:A, 6hqf:B
10 6ici:A 585 65 0.0693 0.0274 0.2462 9.3

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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