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BioLiP
>protein
PDARRQAQLRHLLLQDCGSCHGLRLTGGLGPALTPEALRGKPRESLVATVLMGRPQTPMPPWAGLLSADDAGWLVDRLIE
GEIAP

The query sequence (length=85) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6tp9:A 85 85 1.0000 1.0000 1.0000 3.48e-56 6tp9:C, 6tp9:B, 6tp9:F, 6tp9:D, 6tp9:J, 6tp9:E, 6tp9:K, 6tp9:G, 6tp9:H, 6tp9:I
2 6rtd:B 466 54 0.2941 0.0536 0.4630 2.70e-05 6rtd:A, 6rte:A, 6rte:B
3 1gjq:A 541 56 0.2000 0.0314 0.3036 6.51e-04 1bl9:A, 1bl9:B, 1gjq:B, 5guw:M, 5guw:N, 1hzu:A, 1hzv:A, 1n15:A, 1n15:B, 1n50:A, 1n50:B, 1n90:A, 1n90:B, 1nir:A, 1nir:B, 1nno:A, 1nno:B, 6tpo:A, 6tsi:A, 6tsi:B
4 1aom:B 559 76 0.2706 0.0411 0.3026 7.26e-04 1aof:A, 1aof:B, 1aom:A, 1aoq:A, 1aoq:B, 1dy7:A, 1dy7:B, 1e2r:A, 1e2r:B, 1gq1:A, 1gq1:B, 1h9x:A, 1h9x:B, 1h9y:A, 1h9y:B, 1hcm:A, 1hcm:B, 1hj3:A, 1hj3:B, 1hj4:A, 1hj4:B, 1hj5:A, 1hj5:B, 1qks:A, 1qks:B
5 1b7v:A 71 66 0.2353 0.2817 0.3030 0.010 1c75:A, 1k3g:A, 1k3h:A, 1n9c:A
6 7c90:A 151 86 0.2588 0.1457 0.2558 0.13 7c90:B, 7c90:C, 7c90:D
7 6kls:C 236 18 0.1059 0.0381 0.5000 1.0 6kls:F, 6klv:C, 6klv:F
8 7os0:A 1130 58 0.2353 0.0177 0.3448 2.4 7os0:C
9 5mq6:A 636 56 0.1647 0.0220 0.2500 2.8
10 8dil:A 175 41 0.1529 0.0743 0.3171 4.1 8dil:B, 8dil:C, 8dil:D, 8dil:E, 8dil:F
11 2gc4:D 147 56 0.2000 0.1156 0.3036 4.2 2gc4:H, 2gc4:L, 2gc4:P, 2gc7:D, 2gc7:H, 2gc7:L, 2gc7:P, 1mg2:D, 1mg2:H, 1mg2:L, 1mg2:P, 1mg3:D, 1mg3:H, 1mg3:L, 1mg3:P, 2mta:C
12 2gb0:B 389 37 0.1529 0.0334 0.3514 7.9 2a89:A, 2a89:B, 3bhf:A, 3bhf:B, 3bhk:A, 3bhk:B, 1el5:A, 1el5:B, 1el7:A, 1el7:B, 1el8:A, 1el8:B, 1el9:A, 1el9:B, 1eli:A, 1eli:B, 2gb0:A, 2gf3:A, 2gf3:B, 1l9c:A, 1l9c:B, 1l9d:A, 1l9d:B, 1l9e:A, 1l9e:B, 3m0o:A, 3m0o:B, 3m12:A, 3m12:B, 3m13:A, 3m13:B, 3m13:C, 3m13:D, 3qse:A, 3qse:B, 3qsm:A, 3qsm:B, 3qss:A, 3qss:B
13 2d0w:A 168 25 0.1059 0.0536 0.3600 8.0 2d0w:B
14 4rk6:A 270 20 0.0941 0.0296 0.4000 8.6 4rk6:B, 4rk7:A, 4rk7:B
15 3hq6:A 324 53 0.2000 0.0525 0.3208 9.3 3hq6:B, 3hq8:A, 3hq8:B, 3hq9:A, 3hq9:B
16 7mii:A 497 15 0.1059 0.0181 0.6000 9.8 7mih:A, 7mih:B, 7mih:C, 7mih:E, 7mii:B, 7mii:C, 7mii:E
17 4i8d:B 714 41 0.1412 0.0168 0.2927 9.9 4i8d:A, 3zyz:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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