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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
PCYTATRSECKQKHKFVPGVWMAGEGMDVTTLRRSGSFPVNTQRFLRPDRTCTLCKNSLMRDATQRLPVAITHWRPHSSH
CQRNVAAAKVHSTEGVAREAAANINNDWRVGLDVNPRPEANMRASVAGSHSKVANFAAEKTYQDQYNFNSDTVECRMYSF
RLVQKPPLHLDFKKALRALPRNFNSSTEHAYHRLISSYGTHFITAVDLGGRISVLTALRTCQLTLNGLTADEVGDCLNVE
AQVSIGAQASVSSEYKACEEKKKQHKMATSFHQTYRERHVEVLGGPLDSTHDLLFGNQATPEQFSTWTASLPSNPGLVDY
SLEPLHTLLEEQNPKREALRQAISHYIMSRARWQNCSRPCCQCECQDSKVTNQDCCPRQRGLAHLVVSNFRAEHLWGDYT
TATDAYLKVFFGGQEFRTGVVWNNNNPRWTDKMDFENVLLSTGGPLRVQVWDADYGWDDDLLGSCDRSPHSGFHEVTCEL
NHGRVKFSYHAKCLPHLTGGTCLEYAPQG

The query sequence (length=509) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 3nsj:A 530 520 0.9961 0.9566 0.9750 0.0 7pag:A, 5ug7:A, 4y1s:A, 4y1t:A
2 3t5o:A 871 233 0.1218 0.0712 0.2661 1.25e-14
3 4e0s:B 898 233 0.1218 0.0690 0.2661 1.25e-14 7nyc:B, 7nyd:B
4 4a5w:B 871 230 0.1159 0.0677 0.2565 2.32e-12
5 8b0f:E 513 228 0.0982 0.0975 0.2193 4.44e-09 3ojy:A
6 3w57:A 111 100 0.0766 0.3514 0.3900 5.23e-09 3w57:B
7 6cxo:A 465 262 0.0943 0.1032 0.1832 1.00e-07 6cxo:B
8 7nyc:C 809 183 0.0904 0.0569 0.2514 5.65e-07 7nyd:C
9 7nyd:E 484 193 0.0825 0.0868 0.2176 2.88e-06 7nyc:E
10 3ojy:B 504 184 0.0786 0.0794 0.2174 4.17e-06 8b0f:D
11 8b6u:A 481 168 0.0864 0.0915 0.2619 3.08e-05 8b6v:A, 8b6v:C, 8b6v:D, 8b6v:E, 8b6v:F, 8b6v:G, 8b6v:H, 8b6v:I, 8b6v:J, 8b6v:K, 8b6v:L, 8b6v:M, 8b6v:N, 8b6v:O, 8b6v:P, 8b6v:Q, 8b6v:R, 8b6v:S, 8b6v:T, 8b6v:U, 8b6v:V, 8b6v:W, 8b6w:A, 8b6w:C, 8b6w:D, 8b6w:E, 8b6w:F, 8b6w:G, 8b6w:H, 8b6w:I, 8b6w:J, 8b6w:K, 8b6w:L, 8b6w:M, 8b6w:N, 8b6w:O, 8b6w:P, 8b6w:Q, 8b6w:R, 8b6w:S, 8b6w:T, 8b6w:U, 8b6w:V
12 6dlw:A 460 184 0.0707 0.0783 0.1957 1.33e-04 6dlw:B, 6dlw:C, 6dlw:D, 6dlw:E, 6dlw:F, 6dlw:G, 6dlw:H, 6dlw:I, 6dlw:J, 6dlw:K, 6dlw:L, 6dlw:M, 6dlw:N, 6dlw:O, 6dlw:P, 6dlw:Q, 6dlw:R, 6dlw:S, 6dlw:T, 6dlw:U, 6dlw:V
13 7nyc:D 487 186 0.0864 0.0903 0.2366 0.001 7nyd:D
14 6nyt:A 135 57 0.0373 0.1407 0.3333 0.001
15 7nyd:G 413 180 0.0727 0.0896 0.2056 0.002 8de6:A, 8de6:C, 8de6:G, 7nyc:H, 7nyd:H
16 5a52:A 154 66 0.0373 0.1234 0.2879 0.003
17 8a1d:A 533 151 0.0806 0.0769 0.2715 0.008 8a1d:B, 8a1d:C, 8a1d:D, 8a1d:E, 8a1d:F, 8a1d:G, 8a1d:H, 8a1d:I, 8a1d:J, 8a1d:K, 8a1d:L, 8a1d:M, 8a1d:N, 8a1d:O, 8a1d:P, 8a1s:A, 8a1s:B, 8a1s:C, 8a1s:D, 8a1s:E, 8a1s:F, 8a1s:G, 8a1s:H, 8a1s:I, 8a1s:J, 8a1s:K, 8a1s:L, 8a1s:M, 8a1s:N, 8a1s:O, 8a1s:P
18 4ihb:E 126 76 0.0472 0.1905 0.3158 0.017 7jof:A, 7jof:B, 7jof:C, 7jof:D
19 5ue8:A 847 111 0.0609 0.0366 0.2793 0.020 5ue8:B, 1y8f:A
20 6x1o:C 624 42 0.0314 0.0256 0.3810 0.37 6x1o:A, 6x6u:A, 6x6u:C
21 5a50:A 165 66 0.0314 0.0970 0.2424 0.68 5a4x:A, 5a4x:B, 5a50:B, 5a51:A, 5a51:B, 4v29:A, 4v29:B
22 7d4c:A 595 114 0.0550 0.0471 0.2456 0.98 7c3h:A, 7c3h:B, 7c3i:A, 7c3i:B, 7c3j:A, 7c3j:B, 7c3l:A, 7c3l:B, 7d4d:A, 7d4e:A, 3x0v:A, 3x0v:B
23 4p42:A 455 73 0.0413 0.0462 0.2877 1.9 4npk:A
24 2qp2:A 498 152 0.0727 0.0743 0.2434 2.4
25 1y7b:A 534 51 0.0314 0.0300 0.3137 2.8 1y7b:B, 1y7b:C, 1y7b:D, 1yi7:A, 1yi7:B, 1yi7:C, 1yi7:D
26 4mri:B 303 58 0.0236 0.0396 0.2069 4.4 2i3c:A, 2i3c:B, 4mri:A, 4mxu:A, 4mxu:B, 4nfr:A, 4nfr:B, 2o4h:A, 2o4h:B, 2o53:A, 2o53:B, 2q51:A, 2q51:B, 4tnu:A, 4tnu:B
27 2cm6:A 149 86 0.0432 0.1477 0.2558 7.0 2cm5:A, 2cm6:B, 5lo8:A, 5lo8:B, 5lob:A, 5lob:B, 5lob:C, 5low:A, 5low:B, 5low:C, 5low:H, 5low:I, 5low:J
28 1djg:B 561 48 0.0334 0.0303 0.3542 9.0 1djg:A, 1djh:A, 1djh:B, 1dji:A, 1dji:B, 1djw:A, 1djw:B, 1djx:A, 1djx:B, 1djy:A, 1djy:B, 1djz:A, 1djz:B
29 5yq0:C 304 32 0.0236 0.0395 0.3750 9.5 5yq0:G

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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