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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
PCDCDVGGALDPQCDEATGQCRCRPHMIGRRCEQVQPGYFRPFLDHLTWEAEGAHGQVLEVVERLVTNRETPSWTGVGFV
RLREGQEVEFLVTSLPRAMDYDLLLRWEPQVPEQWAELELVVQRPGPVSAHSPCGHVLPRDDRIQGMLHPNTRVLVFPRP
VCLEPGLSYKLKLKLTGTGGRGSGILIDSLVLQPHVLMLEMFSGGDAAALERRTTFERYRCHEEGLMPSKTPLSEACVPL
LISASSLVYNGALPCQCDPQGSLSSECNPHGGQCRCKPGVVGRRCDACATGYYGFGPAGCQA

The query sequence (length=302) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5lf2:A 302 302 0.9967 0.9967 0.9967 0.0 5lf2:B
2 4wnx:A 429 53 0.0828 0.0583 0.4717 1.06e-06
3 8edk:A 412 59 0.0861 0.0631 0.4407 1.80e-06
4 8edk:A 412 38 0.0464 0.0340 0.3684 0.066
5 4ove:A 422 38 0.0629 0.0450 0.5000 5.58e-04 6fkq:A, 7lrf:A, 7lrf:B, 7ndg:A, 7ndg:G, 7ndg:D, 7ne0:A, 7ne1:A, 4plm:A, 4pln:A, 4pln:B, 4plo:A, 4urt:A
6 4ove:A 422 38 0.0497 0.0355 0.3947 0.27 6fkq:A, 7lrf:A, 7lrf:B, 7ndg:A, 7ndg:G, 7ndg:D, 7ne0:A, 7ne1:A, 4plm:A, 4pln:A, 4pln:B, 4plo:A, 4urt:A
7 8ro1:DX 682 137 0.1126 0.0499 0.2482 0.065
8 3tsd:B 426 83 0.0861 0.0610 0.3133 0.55
9 6az1:Q 115 60 0.0695 0.1826 0.3500 1.3 8ovj:SQ, 8rxh:SQ, 8rxx:SQ
10 7pwd:A 621 98 0.0795 0.0386 0.2449 2.2 6c2y:A, 3cik:A, 5he1:A, 7k7l:A, 3krw:A, 3krx:A, 3pvu:A, 3pvw:A, 5ukk:A, 5wg3:A, 5wg5:A
11 3uzs:A 609 92 0.0795 0.0394 0.2609 2.4 3uzt:A
12 4chg:A 133 32 0.0497 0.1128 0.4688 6.8 4chg:B, 4chg:E, 4chg:D, 4chg:F

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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